SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48748

Length: 467 nt

UniGene Fasta

>sp_v2.0_unigene48748
ATGGGGAAATTAGCTGCCGGCACGGCCAACATCTGCTCCAAACGCGGCGAAATTGTTTGCATTGTGTAAATACAACACATGGCATTGGCCTTGGCAGAGGCTGCGTTTTCAGTTCTAAAGGTCCAGGCGCTCTTTGAATGCTGGGATTCTGCAAAATCCAAGTTCGAGCGTTTAACAGGGCGTTTGCTGAATGGCGTCGGCATGCTTTCCAAATTAAACCCTGCGTTGGTATCCATTGCAATCTATTCGCTTTGCACTGGCGCAGGATTTATTTTGTGGATTTCCGTGGGTTTCTTGGATTTGGCAGCGGGTACTAGTGTCTTAGAGAGCGCCATACATGCGATGGAGTGTGTAAATGAGCATGTCCTCCCTGGGTTGCAGCTTCTCAACGGATTGCTTGCCGTCCTTGTGGGATTCTCCCTATTGCTCGGCCGGATTAATATTAATATCAATGTTAATAGCAACCG

Ace file of the UniGene sp_v2.0_unigene48748

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	unknown [Picea sitchensis]	-	-	1.10665e-25	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1W7

Fln msg: Distance to subject end: 103 aas, your sequence is shorter than subject: 129 - 198

Fln protein: MALALAEAAFSVLKVQALFECWDSAKSKFERLTGRLLNGVGMLSKLNPALVSIAIYSLCTGAGFILWISVGFLDLAAGTSVLESAIHAMECVNEHVLPGLQLLNGLLAVLVGFSLLLGRINININVNSN

Protein Length: 130

Fln nts: ATGGGGAAATTAGCTGCCGGCACGGCCAACATCTGCTCCAAACGCGGCGAAATTGTTTGCATTGTGTAAATACAACAC_-_ATGGCATTGGCCTTGGCAGAGGCTGCGTTTTCAGTTCTAAAGGTCCAGGCGCTCTTTGAATGCTGGGATTCTGCAAAATCCAAGTTCGAGCGTTTAACAGGGCGTTTGCTGAATGGCGTCGGCATGCTTTCCAAATTAAACCCTGCGTTGGTATCCATTGCAATCTATTCGCTTTGCACTGGCGCAGGATTTATTTTGTGGATTTCCGTGGGTTTCTTGGATTTGGCAGCGGGTACTAGTGTCTTAGAGAGCGCCATACATGCGATGGAGTGTGTAAATGAGCATGTCCTCCCTGGGTTGCAGCTTCTCAACGGATTGCTTGCCGTCCTTGTGGGATTCTCCCTATTGCTCGGCCGGATTAATATTAATATCAATGTTAATAGCAACCG

Fln Alignment:

AllPineV4_c47421___LLNGVGMLSKLNPALVSIAIYSLCTGAGFILWISVGFLDLAAGTSVLESAIHAMECVNEHXXXXXXXXXXXXXXXXXXXXXXXRINININVNSN
A9P1W7_______________MLNGVRAFSKLNPALALIAIYALCTGAGFILWIAMGFLDLAAGTRVLVAAIHVMEGLNEHVLPALQLLNGSLALLMGFFILLGRIHININVNSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain