SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48699

Length: 250 nt

UniGene Fasta

>sp_v2.0_unigene48699
AATGTCTTCTGGAACTAGGGAGGTTCTTGTTGAAAGGCTTGGTGCAACGATGAAAGAGAGTTCAATTGCTGTCAAATTAGATGAACAAAATGAGCAAGATGGAGGAACTGGCAAAATTTCAGAGGAAAAGATTGTTCTTGCGACTAAGAAAGGCAGTGCGGTCTTAGACATGTGGCTTCCAGATGAAATAAAGTCACATTATCATGTTTTACATATAGGGGATAATATCTTTGATGCCATGCTGAATCAG

Ace file of the UniGene sp_v2.0_unigene48699

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Poly [ADP-ribose] polymerase 2 n=2 Tax=Arabidopsis RepID=PARP2_ARATH	-	-	2.0e-13	47%
FL-Next	sp=Poly [ADP-ribose] polymerase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	47%
Blast2go	at4g02390-like protein	-	-	1.04309e-17	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	1.04309e-17	68%

Source	InterPros	Term	Type	Identity
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	Poly(ADP-ribose) polymerase, regulatory domain	IPR004102	-	-
Sma3	WGR domain	IPR008893	-	-
Sma3	Poly(ADP-ribose) polymerase, catalytic domain	IPR012317	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q11207

Fln msg: Distance to subject end: 462 aas, your sequence is shorter than subject: 83 - 637

Fln protein: MSSGTREVLVERLGATMKESSIAVKLDEQNEQDGGTGKISEEKIVLATKKGSAVLDMWLPDEIKSHYHVLHIGDNIFDAMLNQ

Protein Length: 84

Fln nts: AATGTCTTCTGGAACTAGGGAGGTTCTTGTTGAAAGGCTTGGTGCAACGATGAAAGAGAGTTCAATTGCTGTCAAATTAGATGAACAAAATGAGCAAGATGGAGGAACTGGCAAAATTTCAGAGGAAAAGATTGTTCTTGCGACTAAGAAAGGCAGTGCGGTCTTAGACATGTGGCTTCCAGATGAAATAAAGTCACATTATCATGTTTTACATATAGGGGATAATATCTTTGATGCCATGCTGAATCAG

Fln Alignment:

AllPineV4_c47362___SSGTREVLVERL--------GATMKESSIAVKLDEQNEQDGGTGKISEEKIVLATKKGSAVLDMWLPDEIKSHYHVLHIGDNIFDAMLNQ
Q11207_______________TTGTKKDLLERLCNDANNVSNAPVKSSNGTDEAEDDN--NGFEEEKKEEKIVTATKKGAAVLDQWIPDEIKSQYHVLQRGDDVYDAILNQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain