SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48667

Length: 427 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene48667
ATTTCTCAGAGATAAACAGGGTGCAGAATTTTTCTGCATTGAGAGCTACGATTCGAGCTTCTAGAATGAAAATGACTATCCAGAGTCAGTTATATTCTCTATTTCTACTTGCGATAATAGTCTGCCTTCAAATCCTGGCTCCAAATTGTTCCGCAGCAAAAACTCACCGAATTGTGGAAGACATCATGGGTTTCCCTAGAGGGCGCCCTACTATACAAGCAACAGGGCAGACACGACAACAGAAACAGAATTCTTCTTTTCAGTACAGAGTCCTGAACAAGTAGTTAAAATCGGTCCATAAAAGTATCAATGATTCTCGAAGACAGCTGAGCTATTTGTCCTGTGGAACCGGTAATCCAATCGATGATTGTTGGCGCTGTGATCCAAATTAGGAACAAAAAATGAACAGGCAAAAGCTTGCAGATTG

Ace file of the UniGene sp_v2.0_unigene48667 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative pectate-lyase [Capsicum annuum]	-	-	2.0e-13	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	pectate lyase	-	-	1.44628e-40	81%

Source	InterPros	Term	Type	Identity
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	AmbAllergen	IPR018082	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS41

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 375 aas, your sequence is shorter than subject: 109 - 490

Fln protein: MKMTIQSQLYSLFLLAIIVCLQILAPNCSAAKTHRIVEDIMGFPRGRPTIQATGQTRQQKQNSSFQYRVLNK*LKSVHKSINDSRRQLSYLSCGTGNPIDDCWRCDPN*

Protein Length: 110

Fln nts: ATTTCTCAGAGATAAACAGGGTGCAGAATTTTTCTGCATTGAGAGCTACGATTCGAGCTTCTAGA_-_ATGAAAATGACTATCCAGAGTCAGTTATATTCTCTATTTCTACTTGCGATAATAGTCTGCCTTCAAATCCTGGCTCCAAATTGTTCCGCAGCAAAAACTCACCGAATTGTGGAAGACATCATGGGTTTCCCTAGAGGGCGCCCTACTATACAAGCAACAGGGCAGACACGACAACAGAAACAGAATTCTTCTTTTCAGTACAGAGTCCTGAACAAGTAGTTAAAATCGGTCCATAAAAGTATCAATGATTCTCGAAGACAGCTGAGCTATTTGTCCTGTGGAACCGGTAATCCAATCGATGATTGTTGGCGCTGTGATCCAAATTAGGAACAAAAAATGAACAGGCAAAAGCTTGCAGATTG

Fln Alignment:

AllPineV4_c47324___MTIQSQLYSLFLLAIIVCLQILAPNCSAAKTHRIVEDIMGFPRGRPTIQATGQTRQQKQNSSFQYRVLNK*LKSVHKSINDSRRQLSYLSCGTGNPIDDCWRCDPN*EQKMNRQKLAD
B8LS41_______________MAKQSQLCYLILFAELICLQILAPKCSAEKTQGMMDSFMGFLRGRPTIQVTEQTQQQ--NSSFPVEAPDEVVKMVQKSINDSRRQLSYLSCGTGNPIDDCWRCEPN--WQMNRQRLAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain