SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48561

Length: 426 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene48561
GTCAATGTGCTCCAAGCTTGTGCTGCCATGGCAGCCATGGAACAAGGCAAGGAGTTGCATGGAGAAATAGCGAGAGGAGGGTTTGAGTCACAGTTATTTGTAGGCAGTGCCCTTTAAATATGTATGTTAAATGTGGAAGTATTGATGATGCACGCCAAGTGTTTGAAAAAATGCCTCAACGAGATCTAGTAGTGTGGAATGGCATGGTGGGATGTTATGCATAGAGTGGTCGTGTCGATGAGGCGTTGGAGCTCTTCGGGGAAATCCCTGAGAGGAATGTGGTCTCTTGGACTTCGATGGTTGCGGGGTTTGCAGGGAACGGGTACATTGAGGAGGCAAGGAAGTTGTTTGAGGAAATGCCAGGAAGAAATATGGTTTCCTAGACTGTGATGATTGCAGTGTATGCTCAACATGGACGGGTAGATG

Ace file of the UniGene sp_v2.0_unigene48561 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|O64766.1\|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35030, mitochondrial; Flags: Precursor gb\|AAC12843.1\| hypothetical protein [Arabidopsis thaliana] gb\|A	-	-	3.0e-23	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	pentatricopeptide repeat-containing protein mitochondrial-like	-	-	1.12784e-27	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: warning!, putative chimeric sequence! or repetitive structure Unexpected STOP codon at 3' end. Distance to subject end: 336 aas, your sequence is shorter than subject: 128 - 644

Fln protein: VNVLQACAAMAAMEQGKELHGEIARGGFESQLFVGSAxxNMYVKCGSIDDARQVFEKMPQRDLVVWNGMVGCYA*SGRVDEALELFGEIPERNVVSWTSMVAGFAGNGYIEEARKLFEEMPGRNMVS*

Protein Length: 129

Fln nts: GTCAATGTGCTCCAAGCTTGTGCTGCCATGGCAGCCATGGAACAAGGCAAGGAGTTGCATGGAGAAATAGCGAGAGGAGGGTTTGAGTCACAGTTATTTGTAGGCAGTGCCxxxxxxAATATGTATGTTAAATGTGGAAGTATTGATGATGCACGCCAAGTGTTTGAAAAAATGCCTCAACGAGATCTAGTAGTGTGGAATGGCATGGTGGGATGTTATGCATAGAGTGGTCGTGTCGATGAGGCGTTGGAGCTCTTCGGGGAAATCCCTGAGAGGAATGTGGTCTCTTGGACTTCGATGGTTGCGGGGTTTGCAGGGAACGGGTACATTGAGGAGGCAAGGAAGTTGTTTGAGGAAATGCCAGGAAGAAATATGGTTTCCTAGACTGTGATGATTGCAGTGTATGCTCAACATGGACGGGTAGATG

Fln Alignment:

AllPineV4_c47203___NVLQACAAMAAMEQGKELHGEIARGGFESQLFVGSALLNMYVKCGSIDDARQVFEKMPQRDLVVWNGMVGCYA*SGRVDEALELFGEIPERNVVSWTSMVAGFAGNGYIEEARKLFEEMPGRNMVS*TVMIAVYAQHGRV
B8LLJ0_______________SILPACTDLEVLG---EFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain