SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48541

Length: 444 nt

UniGene Fasta

>sp_v2.0_unigene48541
ATGGGTACTGGAGCAAGATGTTGTAAACTTGCATTATGATGAGAATATTTACCTCAACTACACAGAACGAACACGCCAGAATTTGAAAGTTCTCAATGAAGATGTGATTGATTATGATGTCCTTGAAGATTTGATCAGACACATTGATGAATACTATGAGCGTGGAGCAATACTTGTCTTTTTGCCAGGTATGGCTGAAATTCAAATATTATTGGATCGGTTAGCTGTTTCACACCAGTTTCGTGGTGCAGCATCAGAATGGCTTCTGCCACTGTATTCATCTATTGCTCCAACTGAACAGCGGAAGGTTTTTCTGAGTCCACCAGAAAATATACGCAAGATTGTGGTAGCCACCAATATTGCAGAGACGAGCATAACTATTGATGATGTTGTTTATGTTATTGACTGTGGCAAGCACAAAGAAAATCACTACAATCCACAAAG

Ace file of the UniGene sp_v2.0_unigene48541

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	helicase associated domain-containing protein [Arabidopsis thaliana] gb\|AEE33493.1\| helicase associated domain-containing protein [Arabidopsis thaliana]	-	-	65%
FL-Next	sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress).	-	-	40%
Blast2go	helicase domain-containing protein	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Chalcone isomerase, subgroup	IPR003466	-	-
Sma3	RWD domain	IPR006575	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q38953

Fln msg: Distance to subject end: 349 aas, your sequence is shorter than subject: 147 - 1168

Fln protein: WVLEQDVVNLHYDENIYLNYTERTRQNLKVLNEDVIDYDVLEDLIRHIDEYYERGAILVFLPGMAEIQILLDRLAVSHQFRGAASEWLLPLYSSIAPTEQRKVFLSPPENIRKIVVATNIAETSITIDDVVYVIDCGKHKENHYNPQ

Protein Length: 148

Fln nts: ATGGGTACTGGAGCAAGATGTTGTAAACTTGCATTATGATGAGAATATTTACCTCAACTACACAGAACGAACACGCCAGAATTTGAAAGTTCTCAATGAAGATGTGATTGATTATGATGTCCTTGAAGATTTGATCAGACACATTGATGAATACTATGAGCGTGGAGCAATACTTGTCTTTTTGCCAGGTATGGCTGAAATTCAAATATTATTGGATCGGTTAGCTGTTTCACACCAGTTTCGTGGTGCAGCATCAGAATGGCTTCTGCCACTGTATTCATCTATTGCTCCAACTGAACAGCGGAAGGTTTTTCTGAGTCCACCAGAAAATATACGCAAGATTGTGGTAGCCACCAATATTGCAGAGACGAGCATAACTATTGATGATGTTGTTTATGTTATTGACTGTGGCAAGCACAAAGAAAATCACTACAATCCACAAAG

Fln Alignment:

AllPineV4_c47177___DVIDYDVLEDLIRHIDEYYERGAILVFLPGMAEI----QILLDRLAVSHQFRGAASEWLLPLYSSIAPTEQRKVFLSPPENIRKIVVATNIAETSITIDDVVYVIDCGKHKENHYNPQ
Q38953_______________DYLDAALITVLQIHLTE--PEGDILVFLTGQEEIDSACQSLYERM--KGLGKNVPELIILPVYSALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain