SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48455

Length: 366 nt

UniGene Fasta

>sp_v2.0_unigene48455
ACATGGGGCATCCAACTGTGTAAGAACGGAAGAGGAGAAAGATAAGTGGCGATTTCAGGTTTCCTTTCGCATTCATTGATAGCACAGAAGTAGCTATCCCCTGGTATCCGTGTACAAGGGGCATCTTTTGCAGGTATCGGAAGAAACAAAGCACCAAAAAGCAAAGAATTCACGATGCCTGAGGTAGATTATTCCGAGCCTGTGAAACTTGCCTGCATTGATCTTTCCAATCCCGACATTAAGGCGACGGCCGCACAAATTCGCAAGGCATGTCTGGACTCTGGATTTTTTTATGTCGTTCATCATGGCATCGATCAAGATTTTTTGGATGAAGTCTTCGAACAAAGTCGACGGCTTTTTGCCCTT

Ace file of the UniGene sp_v2.0_unigene48455

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gb\|AEE31767.1\| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana]	-	-	2.0e-12	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	2-oxoglutarate and fe -dependent oxygenase-like protein	-	-	3.18396e-16	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Isopenicillin N synthase	IPR002283	-	0.0	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPL0

Fln msg: Distance to subject end: 263 aas, your sequence is shorter than subject: 64 - 328

Fln protein: MPEVDYSEPVKLACIDLSNPDIKATAAQIRKACLDSGFFYVVHHGIDQDFLDEVFEQSRRLFAL

Protein Length: 65

Fln nts: ACATGGGGCATCCAACTGTGTAAGAACGGAAGAGGAGAAAGATAAGTGGCGATTTCAGGTTTCCTTTCGCATTCATTGATAGCACAGAAGTAGCTATCCCCTGGTATCCGTGTACAAGGGGCATCTTTTGCAGGTATCGGAAGAAACAAAGCACCAAAAAGCAAAGAATTCACG_-_ATGCCTGAGGTAGATTATTCCGAGCCTGTGAAACTTGCCTGCATTGATCTTTCCAATCCCGACATTAAGGCGACGGCCGCACAAATTCGCAAGGCATGTCTGGACTCTGGATTTTTTTATGTCGTTCATCATGGCATCGATCAAGATTTTTTGGATGAAGTCTTCGAACAAAGTCGACGGCTTTTTGCCCTT

Fln Alignment:

AllPineV4_c47078___VDYSEPVKLACIDLSNPDIKATAAQIRKACLDSGFFYVVHHGIDQDFLDEVFEQSRRLFAL
C0PPL0_______________VDGGSSKNLIAIDLSSSDLTHSASLIKQACLDSGFFYVINHGIRKELFEELFDQSRNFFQL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain