SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48416

Length: 363 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene48416
TCTTCAAAATATCAGTCTGAGCGGCTGTACAAGTTTGGAGGTGCTTCCAGATTCCATAGAGAATTTAACGAATCTCCAACAGATCAATCTGGCGTACTGTGAAAGTTTGAAGGCGCTTCCAATAACTTTGGCAATTTAACAAACCTCACATATATCGATGCATCTCACTCCTCCAATTTGCAGATGCCTTCAAATTTCATGGGGAATCTACTGCGACTGACGCATCTCCATTTGAGTTGTTGTAGCAGGTTGATCGTCTCGAATGAAACGCTTGGAAATATCACCACGCTGGAATGCTTAAATCTCTCAGGTTGTCTCCAAATAGAAGTATTACCTATCCAGGTGGTACATCAAAGGTCCTTG

Ace file of the UniGene sp_v2.0_unigene48416 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	6.0e-17	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	protein	-	-	7.29893e-17	61%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP91

Fln msg: Overlapping hits, possible frame ERROR between 121 and 121, Distance to subject end: 469 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 121 - 583

Fln protein: LQNISLSGCTSLEVLPDSIENLTNLQQINLAYCESLKALxxNFGNLTNLTYIDASHSSNLQMPSNFMGNLLRLTHLHLSCCSRLIVSNETLGNITTLECLNLSGCLQIEVLPIQVVHQRSL

Protein Length: 122

Fln nts: TCTTCAAAATATCAGTCTGAGCGGCTGTACAAGTTTGGAGGTGCTTCCAGATTCCATAGAGAATTTAACGAATCTCCAACAGATCAATCTGGCGTACTGTGAAAGTTTGAAGGCGCTTxxxxxxAACTTTGGCAATTTAACAAACCTCACATATATCGATGCATCTCACTCCTCCAATTTGCAGATGCCTTCAAATTTCATGGGGAATCTACTGCGACTGACGCATCTCCATTTGAGTTGTTGTAGCAGGTTGATCGTCTCGAATGAAACGCTTGGAAATATCACCACGCTGGAATGCTTAAATCTCTCAGGTTGTCTCCAAATAGAAGTATTACCTATCCAGGTGGTACATCAAAGGTCCTTG

Fln Alignment:

AllPineV4_c47037___SLEVLPDSIENLTNLQQINLAYCESLKALPNNFGNLTNLTYIDASHSSNLQMPSNFMGNLLRLTHLHLSCCSRLIVSNETLGNITTLECLNLSGCLQIEVLPIQVVHQRSL
B8LP91_______________SMKLLPNAFGNLTNLQHLNLTGSCDLEMLPNSFGNLTNLQYLNFYGCSRMETLPHSFGSLIRLKHLCLKGCSQLTLLGRTLGNIRTLESLDLSDCQKMEVLPPQVTHQWSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain