SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48354

Length: 287 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene48354
TCCTTCAGCACTACCTTTGTTTTCAGCATGGTGAATCCCCACCTTGACGCTGGTGGTCACGGAATAGCCTTCTTCATTGCGCCCAACACAACTCTCATGGCCGGTCTGGCATCGGAGTATATAGGCTTGGTTAACGGTACCAGCAACGGGCAAGCATACAATCACTTGTTCGCTGTGGAGTTCGATACGACGAGGAGCGTGGAATTGGAGGACCCAACGACAATCACGTGGGCGTGGACATCAACAGCCTCATCTCGGTGAAGACCGCAAATGCTGGGTATTGGAAT

Ace file of the UniGene sp_v2.0_unigene48354 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	L-type lectin-domain containing receptor kinase IV.3 n=2 Tax=Arabidopsis RepID=LRK43_ARATH	-	-	2.0e-18	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	concanavalin a-like lectin kinase-like protein	-	-	2.44854e-26	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	2.44854e-26	66%
Blast2go	protein binding	GO:0005515	Molecular Function	2.44854e-26	66%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.44854e-26	66%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: Overlapping hits, possible frame ERROR between 216 and 213, Distance to subject end: 447 aas, your sequence is shorter than subject: 96 - 636

Fln protein: SFSTTFVFSMVNPHLDAGGHGIAFFIVPNTTLMAGLASEYIGLVNGTSNGQAYNHLFAVEFDTTRSVELExxxDNHVGVDINSLISVKTANAGYWN

Protein Length: 97

Fln nts: TCCTTCAGCACTACCTTTGTTTTCAGCATGGTGAATCCCCACCTTGACGCTGGTGGTCACGGAATAGCCTTCTTCATTGtGCCCAACACAACTCTCATGGCCGGTCTGGCATCGGAGTATATAGGCTTGGTTAACGGTACCAGCAACGGGCAAGCATACAATCACTTGTTCGCTGTGGAGTTCGATACGACGAGGAGCGTGGAATTGGAGxxxxxxxxxGACAATCACGTGGGCGTGGACATCAACAGCCTCATCTCGGTGAAGACCGCAAATGCTGGGTATTGGAAT

Fln Alignment:

AllPineV4_c46963___SFSTTFVFSMVNPHLDAGGHGIAFFIVPNTTLMAGLASEYIGLVNGTSNGQAYNHLFAVEFDTTRSVELEDxNDNHVGVDINSLISVKTANAGYWN
A9NVC0_______________SFSTTFVFSIVPPPSNAGGNGIAFFMTPHTSSMDAQPSQYLGLLNLTTNGQAYNHLFAVEFDTIMNVEFNDxDGNHVGVDVNNLVSVQTETAGYWN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain