SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48299

Length: 284 nt

UniGene Fasta

>sp_v2.0_unigene48299
AATGTTTGATTTAGATGTAGCAGTGGGGAATGCACTGATAGACATGTATGCAAAATGTGGGTGTTTAGAGGATGCACATCGAGTGTTTCGGAAGATGTCTCAAGCGAATGTTATCTCATGGACTGCGATGATTTCAGGATTTGGTTTGCATGGTCGTGGTGAGGATGCTGTGGGGCTTTTCCACCAAATGCAAGAGCTAGGCATGAGGCCAAATGATGTCACCTTCACTGCTGTTTTGTCAGCTTGCAGTCATGCAGGTCTTGTAGATAAGGGCTGGCGAAATT

Ace file of the UniGene sp_v2.0_unigene48299

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q7Y211.2\|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g57430, chloroplastic; Flags: Precursor gb\|AEE79654.1\| pentatricopeptide repeat-containing protein [Ara	-	-	7.0e-24	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	pentatricopeptide repeat-containing protein chloroplastic-like	-	-	2.30821e-31	78%

Source	InterPros	Term	Type	Identity
Sma3	PAK-box/P21-Rho-binding	IPR000095	-	-
Sma3	Ribonuclease P	IPR000100	-	-
Sma3		IPR000173	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 249 aas, your sequence is shorter than subject: 94 - 370

Fln protein: MFDLDVAVGNALIDMYAKCGCLEDAHRVFRKMSQANVISWTAMISGFGLHGRGEDAVGLFHQMQELGMRPNDVTFTAVLSACSHAGLVDKGWRN

Protein Length: 95

Fln nts: AATGTTTGATTTAGATGTAGCAGTGGGGAATGCACTGATAGACATGTATGCAAAATGTGGGTGTTTAGAGGATGCACATCGAGTGTTTCGGAAGATGTCTCAAGCGAATGTTATCTCATGGACTGCGATGATTTCAGGATTTGGTTTGCATGGTCGTGGTGAGGATGCTGTGGGGCTTTTCCACCAAATGCAAGAGCTAGGCATGAGGCCAAATGATGTCACCTTCACTGCTGTTTTGTCAGCTTGCAGTCATGCAGGTCTTGTAGATAAGGGCTGGCGAAATT

Fln Alignment:

AllPineV4_c46899___FDLDVAVGNALIDMYAKCGCLEDAHRVFRKMSQANVISWTAMISGFGLHGRGEDAVGLFHQMQELGMRPNDVTFTAVLSACSHAGLVDKG
A9P0W0_______________FELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain