SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48138

Length: 511 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene48138
GTGGAAGCCTCTGAAAATACAGAGGCACTTTGAATCACAGGGCATAGGAGGCCCTCCGTATAAGCTATTTCTTGGAAATGCCACAGAGATGGTGAAAATGGCGCATCAAGCGAGTTTCCAGACTATGGGATTTTCTCACGATATTCTAGCTCGAGTTCTGCCATTCTATCATCAATGGAGGAAGTCCTACGAGCCTCATCCTATTGTGAAGAAATTGGAAGGTGATGGACTCCCAAATTTGAAAGGCGAGAAGTGGACGCAACACAGAAGAATCATAAATCCTGCGTTTTCCTCAGAGAATTTGAGAGCATTGATTCCTGTGATTACCTGGAGTACCACGAATATGCTAAATAAATGGAAATGTTCCATTGAAGCGGGCGTGACTGAGATAGACATTTGTGAAGAGTTTGAGAATTTTAGTGCAGATGTCATTGCAAAAGCAGGTTTTGGCACCAACTACGAGGAAGGAAGATGCATATTTCGTATGCAGTCCGAGCAGTTAGTCTTTGCT

Ace file of the UniGene sp_v2.0_unigene48138 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9SEM0_RICCO	-	-	2.94273e-44	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	cytochrome p450 734a1-like	-	-	0.0	55%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	55%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	55%
Blast2go	Methane metabolism	00680	55%
Blast2go	Phenylpropanoid biosynthesis	00940	55%
Blast2go	Biosynthesis of phenylpropanoids	01061	55%
Blast2go	Metabolic pathways	01100	55%
Blast2go	Biosynthesis of secondary metabolites	01110	55%

Source	GOs	Term	Type	Identity
Blast2go	brassinosteroid homeostasis	GO:0010268	Biological Process	55%
Blast2go	brassinosteroid metabolic process	GO:0016131	Biological Process	55%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	55%
Blast2go	response to light stimulus	GO:0009416	Biological Process	55%
Blast2go	protein binding	GO:0005515	Molecular Function	55%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	55%
Blast2go	steroid hydroxylase activity	GO:0008395	Molecular Function	55%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWW9

Fln msg: Distance to subject end: 284 aas, your sequence is shorter than subject: 170 - 517

Fln protein: WKPLKIQRHFESQGIGGPPYKLFLGNATEMVKMAHQASFQTMGFSHDILARVLPFYHQWRKSYEPHPIVKKLEGDGLPNLKGEKWTQHRRIINPAFSSENLRALIPVITWSTTNMLNKWKCSIEAGVTEIDICEEFENFSADVIAKAGFGTNYEEGRCIFRMQSEQLVFA

Protein Length: 171

Fln nts: GTGGAAGCCTCTGAAAATACAGAGGCACTTTGAATCACAGGGCATAGGAGGCCCTCCGTATAAGCTATTTCTTGGAAATGCCACAGAGATGGTGAAAATGGCGCATCAAGCGAGTTTCCAGACTATGGGATTTTCTCACGATATTCTAGCTCGAGTTCTGCCATTCTATCATCAATGGAGGAAGTCCTACGAGCCTCATCCTATTGTGAAGAAATTGGAAGGTGATGGACTCCCAAATTTGAAAGGCGAGAAGTGGACGCAACACAGAAGAATCATAAATCCTGCGTTTTCCTCAGAGAATTTGAGAGCATTGATTCCTGTGATTACCTGGAGTACCACGAATATGCTAAATAAATGGAAATGTTCCATTGAAGCGGGCGTGACTGAGATAGACATTTGTGAAGAGTTTGAGAATTTTAGTGCAGATGTCATTGCAAAAGCAGGTTTTGGCACCAACTACGAGGAAGGAAGATGCATATTTCGTATGCAGTCCGAGCAGTTAGTCTTTGCT

Fln Alignment:

AllPineV4_c46718___WKPLKIQRHFESQGIGGPPYKLFLGNATEMVKMAHQASFQTMGFSHDILARVLPFYHQWRKSY---------------EPH---------------------PIVKKLEGDGLPNLKGEKWTQHRRIINPAFSSENLRALIPVITWSTTNMLNKWKCSIEAGVTEIDICEEFENFSADVIAKAGFGTNYEEGRCIFRMQSEQLV
A9NWW9_______________WKPLQVKKCFESQGVRGPPYRLLNGNFADMVRMNTQAKSTPIPWSHDIVPRVLPYYHHWTKTYGKDFIYWVGSKPRLNVPHPELIKEILSNKFGHYENISSNPLGRQLVGQGLVGLRGEKWVQHRRIINPAFHLDFLKGMVPTIVESTANMLEKWGKLVLSGAEEVEVLKEFCNLTADVISRTALGSSYAEAKHIFNLQDQQML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain