SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene47707

Length: 347 nt

UniGene Fasta

>sp_v2.0_unigene47707
ATGGGGATATCACGGTGTTTTGCCTGCAGTGCAGGGGAACGCAGCAGAGCAACCAGGGTTAGGCCAGAATCTTAGCTGCGGCTACTGCGACAGGGCGATTAATGGCAATATCAGTGGTAGTAATAGTACTAGCGGCATTGTGTGCGATGTTTGTGAGCGAAGTTACCATGTGGGATGCGTGAAGCTGAGGCCAAAGCATGCTTCGGCGTTGGACGACTGGATGTGCCCCAATTGCTCCAAGGGGAGCAGTGGAAGTCAGCGATGGCCGTTGGGAGTTTTGGGTTCGGAGGCTAGGAGTAGATTAGGGTTTAAGGACATTCATGGTGGTGGTGGGGATGGCAGATCGG

Ace file of the UniGene sp_v2.0_unigene47707

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	methyl-CPG-binding domain 9 [Arabidopsis thaliana] sp\|Q9SGH2.1\|MBD9_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 9; Short=AtMBD9; Short=MBD09; AltName: Full=Histone acetyl tranferase MBD9; AltName: Full=Methyl-CpG-binding protein MBD9	-	-	2.0e-07	38%
FL-Next	sp=Methyl-CpG-binding domain-containing protein 9; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	38%
Blast2go	methyl-CPG-binding domain 9	-	-	4.6877e-11	47%

Source	GOs	Term	Type	e value	Identity
Blast2go	anatomical structure development	GO:0048856	Biological Process	4.6877e-11	47%
Blast2go	multicellular organismal development	GO:0007275	Biological Process	4.6877e-11	47%
Blast2go	histone acetylation	GO:0016573	Biological Process	4.6877e-11	47%
Blast2go	binding	GO:0005488	Molecular Function	4.6877e-11	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SGH2

Fln msg: Distance to subject end: 2009 aas, your sequence is shorter than subject: 115 - 2176

Fln protein: WGYHGVLPAVQGNAAEQPGLGQNLSCGYCDRAINGNISGSNSTSGIVCDVCERSYHVGCVKLRPKHASALDDWMCPNCSKGSSGSQRWPLGVLGSEARSRLGFKDIHGGGGDGRS

Protein Length: 116

Fln nts: ATGGGGATATCACGGTGTTTTGCCTGCAGTGCAGGGGAACGCAGCAGAGCAACCAGGGTTAGGCCAGAATCTTAGCTGCGGCTACTGCGACAGGGCGATTAATGGCAATATCAGTGGTAGTAATAGTACTAGCGGCATTGTGTGCGATGTTTGTGAGCGAAGTTACCATGTGGGATGCGTGAAGCTGAGGCCAAAGCATGCTTCGGCGTTGGACGACTGGATGTGCCCCAATTGCTCCAAGGGGAGCAGTGGAAGTCAGCGATGGCCGTTGGGAGTTTTGGGTTCGGAGGCTAGGAGTAGATTAGGGTTTAAGGACATTCATGGTGGTGGTGGGGATGGCAGATCGG

Fln Alignment:

AllPineV4_c46236___GNAAEQPGLGQNLSCGYCDRAXXXXXXXXXXXXXXVCDVCERSYHVGCVKLRPKHASALDDWMCPNCSKGSSGSQRWPLGV
Q9SGH2_______________GAPAEVPEPDRDASCGACGRPESIELVV-------VCDACERGFHMSCVNDGVEAAPSAD-WMCSDCRTGGERSKLWPLGV

SSRs (tot: 1)

Start position	End position	Sequence	Length
322	333	TGG TGG TGG TGG	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain