SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene47447

Length: 416 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene47447
GTGGTCATCGGCAAGAATTCTATTCCCTTCTGGCAGATCGAGGGGCTTCGTGGAGTACATATCCTCCGGGCAAAAGCAAGGCGATATGCTGCTAATAGTTCCAAATGGAGTTCACGCTCCGAGGCTTGGAAACGAGGCACGACTAACCCAAAGAATCAAGGTAAAGAAAGGGTCCTACTATTCTCTCACCTTCAGCGTCGCTCGAACCTGCGCCCAAATGGAGACCTTGAATGTATCTGTTCCGCCTGACGCCGGGGAGCTGCCAATGCAAACGATTTATAGCAGCACGGGGTGGGATTCGTATGCATGGGCCTTCCGGGCGCCCGCCAAAATGGTGGATGTCATTGTTCACAATCCTGGCATGGATGACGATCCCGCCTGCGGTCCTCTCATCGACGACATCGCCATCAAGGAGC

Ace file of the UniGene sp_v2.0_unigene47447 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB87702.1\| putative protein [Arabidopsis thaliana] gb\|AAK76721.1\| unknown protein [Arabidopsis thaliana] gb\|AAM20000.1\| unknown protein [Arabidopsis thaliana] gb\|AED91677.1\| uncharacterized protein [Arab	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	uncharacterized protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	79%
Blast2go	response to karrikin	GO:0080167	Biological Process	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Protein of unknown function DUF642	IPR006946	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Sterol methyltransferase C-terminal	IPR013705	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1W3

Fln msg: STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 138 - 182

Fln protein: WSSARILFPSGRSRGFVEYISSGQKQGDMLLIVPNGVHAPRLGNEARLTQRIKVKKGSYYSLTFSVARTCAQMETLNVSVPPDAGELPMQTIYSSTGWDSYAWAFRAPAKMVDVIVHNPGMDDDPACGPLIDDIAIKE

Protein Length: 139

Fln nts: GTGGTCATCGGCAAGAATTCTATTCCCTTCTGGCAGATCGAGGGGCTTCGTGGAGTACATATCCTCCGGGCAAAAGCAAGGCGATATGCTGCTAATAGTTCCAAATGGAGTTCACGCTCCGAGGCTTGGAAACGAGGCACGACTAACCCAAAGAATCAAGGTAAAGAAAGGGTCCTACTATTCTCTCACCTTCAGCGTCGCTCGAACCTGCGCCCAAATGGAGACCTTGAATGTATCTGTTCCGCCTGACGCCGGGGAGCTGCCAATGCAAACGATTTATAGCAGCACGGGGTGGGATTCGTATGCATGGGCCTTCCGGGCGCCCGCCAAAATGGTGGATGTCATTGTTCACAATCCTGGCATGGATGACGATCCCGCCTGCGGTCCTCTCATCGACGACATCGCCATCAAGGAGC

Fln Alignment:

AllPineV4_c45943___PSGRSRGFVEYISSGQKQGDMLLIVPNGVHAPRLGNEARLTQRIKVKKGSYYSLTFSVARTCAQMETLNVSVPPDAGELPMQTIYSSTGWDSYAWAFRAPAKMVDVIVHNPGMDDDPAC
A9P1W3_______________PQWRTKGFVEYITSGHHQRDMLVVVPEGAHAVRLGNEASISQSIKVTRGSYYSLTFSAARTCAQSERLNVSVPPFSGDISIQTLYSSNGWDAYSWAFRAPSSVVDVILHNPGVEEDPAC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain