SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene46805

Length: 350 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene46805
GTTGCTGGTGTGGTCTGTTTGCTGGCTAGTGTTATTCCTGAGAACATCCGTTGGGATATTTTGAACCCAGCAAGCATGAAACAAGCACTAGTTGAAGGTGCTGCAAAACTTGGTGGTCCAAATATGTTTGAGCAGGGTGCAGGCCGGGTTGACTTGCTTGAGTCATATGAAATCCTTATCAAATACAAGCCTCGGGCAAGCATTTTTCCAAATATTCTTGACTTTACAGATTGTCCATATTCGTGGCCTTTCTGTCGGCAACCATTGTATGCAGGTGCAATGCCAGTTATATTTAATGCCACTATTTTAAATGGTATGGGGGTCGTTGGACATGTCGAGAGTGAACCAAG

Ace file of the UniGene sp_v2.0_unigene46805 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Site-1 protease, putative n=1 Tax=Ricinus communis RepID=B9RKQ2_RICCO	-	-	87%
FL-Next	tr=Site-1 protease, putative; Ricinus communis (Castor bean).	-	-	87%
Blast2go	membrane-bound transcription factor site-1 protease	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	89%
Blast2go	proteolysis	GO:0006508	Biological Process	89%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	89%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	89%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RKQ2

Fln msg: Distance to subject end: 511 aas, your sequence is shorter than subject: 116 - 1047

Fln protein: VAGVVCLLASVIPENIRWDILNPASMKQALVEGAAKLGGPNMFEQGAGRVDLLESYEILIKYKPRASIFPNILDFTDCPYSWPFCRQPLYAGAMPVIFNATILNGMGVVGHVESEP

Protein Length: 117

Fln nts: GTTGCTGGTGTGGTCTGTTTGCTGGCTAGTGTTATTCCTGAGAACATCCGTTGGGATATTTTGAACCCAGCAAGCATGAAACAAGCACTAGTTGAAGGTGCTGCAAAACTTGGTGGTCCAAATATGTTTGAGCAGGGTGCAGGCCGGGTTGACTTGCTTGAGTCATATGAAATCCTTATCAAATACAAGCCTCGGGCAAGCATTTTTCCAAATATTCTTGACTTTACAGATTGTCCATATTCGTGGCCTTTCTGTCGGCAACCATTGTATGCAGGTGCAATGCCAGTTATATTTAATGCCACTATTTTAAATGGTATGGGGGTCGTTGGACATGTCGAGAGTGAACCAAG

Fln Alignment:

AllPineV4_c45167___VAGVVCLLASVIPENIRWDILNPASMKQALVEGAAKLGGPNMFEQGAGRVDLLESYEILIKYKPRASIFPNILDFTDCPYSWPFCRQPLYAGAMPVIFNATILNGMGVVGHVESEP
B9RKQ2_______________VAGVVCLLVSIIPESNRKDILNPASMKQALVEGAAKLSGPNMYEQGAGRVDLLESYEILKSYKPRASIFPSILDFTDCPYSWPFCRQPLYAGAMPVMFNATILNGMGVIGYVESPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain