SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45865

Length: 396 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene45865
AAGGGGCTTTGAGAGTGTGCTCAGTATTTTGCATTGCTGGGTGGCTTGCCATAGCTTTTGCAAAGGATCCTCTACCATTGGATATTGGAAGACTGTTAGTTGGATATGGAGTTGGGCTAACTTCTTATACAGTGCCTGTGTATATAGCTGAAATATCTCCCAAAAGCTTGAGAGGAGTGCTTACAACTACAAATCAGCTCTTCATAACGACTGGAACATTGATAGTTTATCTTATTGGAGTGCTGGTGACGTGGCGCACTCTTGCTATCACTGGAGTTATTTTCCCAATACTCTTACTCATAGGTCTTTTTCTTATTCCAGAGTCTCCAAGATGGCTGGCAAAGGTTGGTCGTGAAAAAGATTTTGAAGTAGCATTACAAGCCCTTCGAGGAAAGA

Ace file of the UniGene sp_v2.0_unigene45865 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative sugar transporter [Solanum lycopersicum]	-	-	2.0e-37	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	sugar transporter erd6-like 7	-	-	0.0	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXP9

Fln msg: Distance to subject end: 240 aas, your sequence is shorter than subject: 131 - 388

Fln protein: GALRVCSVFCIAGWLAIAFAKDPLPLDIGRLLVGYGVGLTSYTVPVYIAEISPKSLRGVLTTTNQLFITTGTLIVYLIGVLVTWRTLAITGVIFPILLLIGLFLIPESPRWLAKVGREKDFEVALQALRGK

Protein Length: 132

Fln nts: AAGGGGCTTTGAGAGTGTGCTCAGTATTTTGCATTGCTGGGTGGCTTGCCATAGCTTTTGCAAAGGATCCTCTACCATTGGATATTGGAAGACTGTTAGTTGGATATGGAGTTGGGCTAACTTCTTATACAGTGCCTGTGTATATAGCTGAAATATCTCCCAAAAGCTTGAGAGGAGTGCTTACAACTACAAATCAGCTCTTCATAACGACTGGAACATTGATAGTTTATCTTATTGGAGTGCTGGTGACGTGGCGCACTCTTGCTATCACTGGAGTTATTTTCCCAATACTCTTACTCATAGGTCTTTTTCTTATTCCAGAGTCTCCAAGATGGCTGGCAAAGGTTGGTCGTGAAAAAGATTTTGAAGTAGCATTACAAGCCCTTCGAGGAAAGA

Fln Alignment:

AllPineV4_c44039___GALRVCSVFCIAGWLAIAFAKDPLPLDIGRLLVGYGVGLTSYTVPVYIAEISPKSLRGVLTTTNQLFITTGTLIVYLIGVLVTWRTLAITGVXXXXXXXXXXXXXPESPRWLAKVGREKDFEVALQALRGK
A9NXP9_______________GALRVCSVFCIAGWLTIGFAKDPLPLDMGRLLVGYGVGLTSYTVPVYIAEISPKSLRGVLTTTNQLFITTGTLIVYLLGMLVNWRILAITGVIFPILLLTGLFLIPESPRWLAKVGRGKDFEAALQALRGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain