SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45855

Length: 375 nt

UniGene Fasta

>sp_v2.0_unigene45855
ATGGGAGAGCAGGAAGAACTGGACCAGGACATTGTTATCGTCTTTATTCTTCTGCAGTTTTCAACAATACATTTCCTGATTTTTCTGTACCTGAAATATGCAAGGTTCCTATCGAGGGTATTGTACTTCTTCTGAAATACATGGGTATCAATAAGGTAGTCAACTTCCCTTTCCCTACCCCTCCCGATATGACATCCTTAGAGGAAGCTGAACGATGCTTGAAGGCCCTTTCAGCACTGGATCAAGCTACAGGAATGCTTATGCCAGTTGGAGAAGCGATGGCGTTATATCCTATCAGTCCTCGTCATTCGCGTATGCTTTTAACTGTCTTTGAAACAGTAAGTAAGTTGGAGGAATGGGCTGGAGCAAACTTGG

Ace file of the UniGene sp_v2.0_unigene45855

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to helicase domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI0001983869	-	-	5.00264e-43	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	helicase domain-containing protein	-	-	0.0	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	79%
Blast2go	binding	GO:0005488	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADJ5

Fln msg: Distance to subject end: 248 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 124 - 348

Fln protein: GRAGRTGPGHCYRLYSSAVFNNTFPDFSVPEICKVPIEGIVLLLKYMGINKVVNFPFPTPPDMTSLEEAERCLKALSALDQATGMLMPVGEAMALYPISPRHSRMLLTVFETVSKLEEWAGANL

Protein Length: 125

Fln nts: _-_ATGGGAGAGCAGGAAGAACTGGACCAGGACATTGTTATCGTCTTTATTCTTCTGCAGTTTTCAACAATACATTTCCTGATTTTTCTGTACCTGAAATATGCAAGGTTCCTATCGAGGGTATTGTACTTCTTCTGAAATACATGGGTATCAATAAGGTAGTCAACTTCCCTTTCCCTACCCCTCCCGATATGACATCCTTAGAGGAAGCTGAACGATGCTTGAAGGCCCTTTCAGCACTGGATCAAGCTACAGGAATGCTTATGCCAGTTGGAGAAGCGATGGCGTTATATCCTATCAGTCCTCGTCATTCGCGTATGCTTTTAACTGTCTTTGAAACAGTAAGTAAGTTGGAGGAATGGGCTGGAGCAAACTTGG

Fln Alignment:

AllPineV4_c44027___VPEICKVPIEGIVLLLKYMGINKVVNFPFPTPPDMTSLEEAERCLKALSALDQATGMLMPVGEAMALYPISPRHSRMLL
D5ADJ5_______________VPEIQRTNLGNVVLLLKSLNIENLLDFDFMDPPPQDNILNSMYQLWVLGALDN-VGRLTALGRKMVEFPLDPPLAKMLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain