SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45822

Length: 248 nt

UniGene Fasta

>sp_v2.0_unigene45822
ATGGGGGATTATGCGGCTTTTGTTGATATAGGATTACATTTAACAGTAAGTGATGATGAAGTTAGTGTATCTTATTGATGGAAAATTGCATCTACCTGCATGGTTTGGGGTGCCTCCCCTGGTTGCATCTCAGATGGCCTTCAAAGATGCCATCACATTTTCCAGTGGATACACGTCCGAAGTCAACCCATCTCCTCTCTTTCTGCAAACATACAAGAATTGCAGGGTTTTTCACAAGCCTTCTCTTG

Ace file of the UniGene sp_v2.0_unigene45822

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	unknown [Picea sitchensis]	-	-	3.67217e-18	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUJ6

Fln msg: Distance to subject end: 407 aas, your sequence is shorter than subject: 57 - 464

Fln protein: MENCIYLHGLGCLPWLHLRWPSKMPSHFPVDTRPKSTHLLSFCKHTRIAGFFTSLLL

Protein Length: 58

Fln nts: ATGGGGGATTATGCGGCTTTTGTTGATATAGGATTACATTTAACAGTAAGTGATGATGAAGTTAGTGTATCTTATTG_-_ATGGAAAATTGCATCTACCTGCATGGTTTGGGGTGCCTCCCCTGGTTGCATCTCAGATGGCCTTCAAAGATGCCATCACATTTTCCAGTGGATACACGTCCGAAGTCAACCCATCTCCTCTCTTTCTGCAAACATACAAGAATTGCAGGGTTTTTCACAAGCCTTCTCTTG

Fln Alignment:

AllPineV4_c43989___MENCIYLHGLGCLPWLHLRWPSKMPSHFPVDTRPKSTHLLSFCKHTRIAGFFTS
A9NUJ6_______________MENCIYLHRLGFLPHLHLSWPPKMSSHFQVDIRPKSTHRFSFSKHARLAGVFNN

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain