SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45791

Length: 199 nt

UniGene Fasta

>sp_v2.0_unigene45791
TTCTTTATGACACTTATGGGTTTCCTGTAGAGATTACAAAAGAAGTTGCTGAAGAGAAAGGTGTAGCTGTAGATTTGCAAGAGTTTGAAGCTGAAATGGAAATTCAGAGGCAGAAGTCTCAGGCTGCTCACAATGTTGTTAAACTTTCAGTCGGGGGTGCTGTTTCAGAGCTTTTAAGTACAGTTTCCGAAACAGAGTT

Ace file of the UniGene sp_v2.0_unigene45791

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alanyl-tRNA synthetase [Arabidopsis thaliana] sp\|Q9FFC7.2\|SYAP_ARATH RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; AltName: Full=Protein EMBRYO DEFECTIVE 1030; AltName: Full=Protein EMBRYO D	-	-	3.0e-14	60%
FL-Next	sp=Probable alanyl-tRNA synthetase, chloroplastic; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	62%
Blast2go	alanyl-trna synthetase	-	-	2.02786e-23	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	2.02786e-23	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	2.02786e-23	80%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	2.02786e-23	80%
Blast2go	membrane	GO:0016020	Cellular Component	2.02786e-23	80%

Source	InterPros	Term	Type	Identity
Sma3	Alanyl-tRNA synthetase, class IIc	IPR002318	-	-
Sma3	Phosphoesterase, DHHA1	IPR003156	-	-
Sma3	Threonyl/alanyl tRNA synthetase, SAD	IPR012947	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, N-terminal	IPR018164	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, core domain	IPR018165	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: C5Z7K4

Fln msg: Distance to subject end: 434 aas, your sequence is shorter than subject: 65 - 961

Fln protein: LYDTYGFPVEITKEVAEEKGVAVDLQEFEAEMEIQRQKSQAAHNVVKLSVGGAVSELLSTVSETE

Protein Length: 66

Fln nts: TTCTTTATGACACTTATGGGTTTCCTGTAGAGATTACAAAAGAAGTTGCTGAAGAGAAAGGTGTAGCTGTAGATTTGCAAGAGTTTGAAGCTGAAATGGAAATTCAGAGGCAGAAGTCTCAGGCTGCTCACAATGTTGTTAAACTTTCAGTCGGGGGTGCTGTTTCAGAGCTTTTAAGTACAGTTTCCGAAACAGAGTT

Fln Alignment:

AllPineV4_c43953___LYDTYGFPVEITKEVAEEKGVAVDLQEFEAEMEIQRQKSQAAHNVVKLSVGGAVSELLSTVSET
C5Z7K4_______________LYDTYGFPVEITAEIASERGVTVDIEGFDIEMENQRKQSQAAHNVVKLSVGNE-TEIIKSIPDT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain