SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45576

Length: 352 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene45576
AAGCGCATCATTTGGTATACATTGCAGGATGGTCCATATATGAAAAAGTTAAGCTTGTGAGGGAGCCTACAAGAACATTGCCAGATGGATTCGATTTGAGCCTGGGGGAGCTTCTGAAATTCAAGTCTCAAGAAGGAGTACGAGTTCTGTTGCTTGTATGGGACGACAAAACTTCGCATGATAAATGCTTCTTTAAAACGGAAGGAATTATGCAAACACATGATGAAGAAACTAGGAATTTTTTCAAACATTCTACTGTTCATTGTGTGCTTGCACCTCGCTATGCAAGCCATAAGCTTAGTTGGTTCAAACAACGGGTTGTTGGTACATTATATACTCACCACCAGAAACT

Ace file of the UniGene sp_v2.0_unigene45576 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phospholipase D n=1 Tax=Picea sitchensis RepID=B8LQ49_PICSI	-	-	84%
FL-Next	sp=Phospholipase D; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	phospholipase d delta-like	-	-	88%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Phospholipase D/Transphosphatidylase	IPR001736	-	-
Sma3	YLP motif	IPR004019	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Phospholipase D, plant	IPR011402	-	-
Sma3	Phospholipase D	IPR015679	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ49

Fln msg: Distance to subject end: 495 aas, your sequence is shorter than subject: 116 - 861

Fln protein: AHHLVYIAGWSIYEKVKLVREPTRTLPDGFDLSLGELLKFKSQEGVRVLLLVWDDKTSHDKCFFKTEGIMQTHDEETRNFFKHSTVHCVLAPRYASHKLSWFKQRVVGTLYTHHQK

Protein Length: 117

Fln nts: AAGCGCATCATTTGGTATACATTGCAGGATGGTCCATATATGAAAAAGTTAAGCTTGTGAGGGAGCCTACAAGAACATTGCCAGATGGATTCGATTTGAGCCTGGGGGAGCTTCTGAAATTCAAGTCTCAAGAAGGAGTACGAGTTCTGTTGCTTGTATGGGACGACAAAACTTCGCATGATAAATGCTTCTTTAAAACGGAAGGAATTATGCAAACACATGATGAAGAAACTAGGAATTTTTTCAAACATTCTACTGTTCATTGTGTGCTTGCACCTCGCTATGCAAGCCATAAGCTTAGTTGGTTCAAACAACGGGTTGTTGGTACATTATATACTCACCACCAGAAACT

Fln Alignment:

AllPineV4_c43696___AHHLVYIAGWSIYEKVKLVREPTRTLPDGFDLSLGELLKFKSQEGVRVLLLVWDDKTSHDKCFFKTEGIMQTHDEETRNFFKHSTVHCVLAPRYASHKLSWFKQRVVGTLYTHHQK
B8LQ49_______________AHHLVYITGWSIYHKVKLVREPTRPLPLGGDLNLGELLKFKSQEGVRVLLLVWDDKTSHHNMLLKTEGVMQTHDEETKKFFKHSSVQCVLAPRYASTKLSWFKQQVVGTLYTHHQK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain