SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45297

Length: 373 nt

UniGene Fasta

>sp_v2.0_unigene45297
GTGCTCGAAAACCTGGTTCAGATTATATTCTGATGCTTGAGAAGGGTAACTTGTCTCATGAAGCATTTCTTCGAAATGCAAGAAATAGTGAAGAGACCTTGCGCAAGGAAGCGATTGAGAGAACTGATCTGAGCCATCTCAAGGATTCATCAAAGTTGAGTGCTGTGGAGACACCATCAGGAGCTGTATATGGGGTGGCCAGCACTGGTGCCATTGTAAGTTTGAACTCTGCCGTTGGGCTCATCCATTTCTATTGCTCCCAGCTGCCAAGTGACAGGTACTCAATATTAAGACCAGAATTTACCATGAGGCAACATGAGAAGACAGGAGGTTCTATTGAGTATTCCTGTGAACTTCAGCTTCCTTGCAATGC

Ace file of the UniGene sp_v2.0_unigene45297

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gb\|AAM52322.1\|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gb\|ABF93701.1\| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza	-	-	73%
FL-Next	sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice).	-	-	79%
Blast2go	endoribonuclease dicer homolog 1-like	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	embryonic pattern specification	GO:0009880	Biological Process	87%
Blast2go	suspensor development	GO:0010098	Biological Process	87%
Blast2go	production of lsiRNA involved in RNA interference	GO:0010599	Biological Process	87%
Blast2go	mRNA cleavage involved in gene silencing by miRNA	GO:0035279	Biological Process	87%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	87%
Blast2go	production of miRNAs involved in gene silencing by miRNA	GO:0035196	Biological Process	87%
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	87%
Blast2go	virus induced gene silencing	GO:0009616	Biological Process	87%
Blast2go	cytokinesis	GO:0000910	Biological Process	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	87%
Blast2go	double-stranded RNA binding	GO:0003725	Molecular Function	87%
Blast2go	nuclear dicing body	GO:0010445	Cellular Component	87%
Blast2go	regulation of seed maturation	GO:2000034	Biological Process	87%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease III domain	IPR000999	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Dicer double-stranded RNA-binding fold	IPR005034	-	-
Sma3	Helicase/UvrB domain	IPR006935	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LMR2

Fln msg: Distance to subject end: 1019 aas, your sequence is shorter than subject: 123 - 1883

Fln protein: ARKPGSDYILMLEKGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDSSKLSAVETPSGAVYGVASTGAIVSLNSAVGLIHFYCSQLPSDRYSILRPEFTMRQHEKTGGSIEYSCELQLPCN

Protein Length: 124

Fln nts: GTGCTCGAAAACCTGGTTCAGATTATATTCTGATGCTTGAGAAGGGTAACTTGTCTCATGAAGCATTTCTTCGAAATGCAAGAAATAGTGAAGAGACCTTGCGCAAGGAAGCGATTGAGAGAACTGATCTGAGCCATCTCAAGGATTCATCAAAGTTGAGTGCTGTGGAGACACCATCAGGAGCTGTATATGGGGTGGCCAGCACTGGTGCCATTGTAAGTTTGAACTCTGCCGTTGGGCTCATCCATTTCTATTGCTCCCAGCTGCCAAGTGACAGGTACTCAATATTAAGACCAGAATTTACCATGAGGCAACATGAGAAGACAGGAGGTTCTATTGAGTATTCCTGTGAACTTCAGCTTCCTTGCAATGC

Fln Alignment:

AllPineV4_c43362___ARKPGSDYILMLEKGNLSHEAFLRNARNSEETLRKEAIERTXXXXXXXXXXXXAVETPSGAVYGVASTGAIVSLNSAVGLIHFYCSQLPSDRYSILRPEFTMRQHEKTGGSIEYSCELQLPCN
Q8LMR2_______________ARKPGSDYILMLERGNISHETFLRNARNSEETLRKEAMERTDLSHLDGTSVLSPVDTSPGSMYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain