SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45064

Length: 252 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene45064
CGTGGTGGTGCTCTGTACCGTGGATTAAGTCTATCTGCAAAAGGACGAAGGGCAGGGGCAGATGACATGGAGGCAGCAGATCGTCTTCCTCTTCTAAATGACAGCTACTATACAGATGTTCTCTGTGAACATGGAGGCTTTTTGGCAATTGCTAACAGGGTTGATCGTATCCACAAAAATCCATGGATTGGATTTCAGTCCTGGCGTGCCACTGGAAGAAAGGTTTCCTTGTCAACTGAAGCTGAGAGTAGT

Ace file of the UniGene sp_v2.0_unigene45064 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9T3U9_RICCO	-	-	2.0e-26	68%
FL-Next	tr=UDP-glycosyltransferase family protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Blast2go	udp-glycosyltransferase family protein	-	-	1.79404e-33	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	1.79404e-33	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	0.0	-
Sma3	Basic-leucine zipper domain	IPR004827	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F4JWA5

Fln msg: Distance to subject end: 255 aas, your sequence is shorter than subject: 84 - 1035

Fln protein: RGGALYRGLSLSAKGRRAGADDMEAADRLPLLNDSYYTDVLCEHGGFLAIANRVDRIHKNPWIGFQSWRATGRKVSLSTEAESS

Protein Length: 85

Fln nts: CGTGGTGGTGCTCTGTACCGTGGATTAAGTCTATCTGCAAAAGGACGAAGGGCAGGGGCAGATGACATGGAGGCAGCAGATCGTCTTCCTCTTCTAAATGACAGCTACTATACAGATGTTCTCTGTGAACATGGAGGCTTTTTGGCAATTGCTAACAGGGTTGATCGTATCCACAAAAATCCATGGATTGGATTTCAGTCCTGGCGTGCCACTGGAAGAAAGGTTTCCTTGTCAACTGAAGCTGAGAGTAGT

Fln Alignment:

AllPineV4_c43083___GALYRGLSLSAKGRRAGADDMEAADRLPLLNDSYYTDVLCEHGGFLAIANRVDRIHKNPWIGFQSWRATGRKVSLSTEAESS
F4JWA5_______________GSLYRGLSLSSKDRRLSSDDVDAADRLPLLNDTYYRDILCEIGGMFSVANKVDSIHMRPWIGFQSWRAAGRKVSLSSKAEES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain