SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44594

Length: 441 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene44594
ATATCGTGAGCACAAGGATCGGCTTGTGCGGAAGAGCATTACATCGCTGCTACCTCGAAACCTTCACTGTCACTCATCGTTTTGTCACATCTTATCTTAAGATATGCATGGAACATATTCTGTCAGTACTCCGCACTCCAGCTGAACGTGCAAGTGGATTTGTAGCTCTTGGTGAAATGGCTGGAGCCCTAGATGGAGAGTTGATAAACTATTTGCCGACAATTACGTCACATATACGTGATGCTATCACTCCACGTAGGGGCAAACCTTCTATGGAGGCGCTAGCATGTGCAGGGAGTTTGCAAAAGCTATGGGTCCTGCTATGGAACCTTATATAAGGAACAACTTATTGGATGCCATGTTTTCTGCTGGCCTGTCCGATACCTTGGTGAAAGCCCTTGATCAGATAGCTTCTAGTCTACCTTCTTTACTGCCTTTCGC

Ace file of the UniGene sp_v2.0_unigene44594 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein kinase TOR n=3 Tax=Poaceae RepID=TOR_ORYSJ	-	-	75%
FL-Next	sp=Serine/threonine-protein kinase TOR; Oryza sativa subsp. japonica (Rice).	-	-	68%
Blast2go	target of rapamycin	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	rRNA transcription	GO:0009303	Biological Process	87%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	87%
Blast2go	protein self-association	GO:0043621	Molecular Function	87%
Blast2go	transferase activity, transferring phosphorus-containing groups	GO:0016772	Molecular Function	87%
Blast2go	cytoplasm	GO:0005737	Cellular Component	87%
Blast2go	nucleus	GO:0005634	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Ribosomal protein L23/L25, conserved site	IPR001014	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	PIK-related kinase, FATC	IPR003152	-	-
Sma3	FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding	IPR009076	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	PIK-related kinase	IPR014009	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0DJS1

Fln msg: Separated hits, possible frame ERROR between 67 and 78, Unexpected STOP codon at 3' end. Distance to subject end: 2035 aas, your sequence is shorter than subject: 131 - 2465

Fln protein: YREHKDRLVRKSITSLLPRNLxxxxxRFVTSYLKICMEHILSVLRTPAERASGFVALGEMAGALDGELINYLPTITSHIRDAITPRRGKPSMEALACAGSLQKLWVLLWNLI*GTTYWMPCFLLACPIPW*

Protein Length: 132

Fln nts: ATATCGTGAGCACAAGGATCGGCTTGTGCGGAAGAGCATTACATCGCTGCTACCTCGAAACCTTCAxxxxxxxxxxxxTCGTTTTGTCACATCTTATCTTAAGATATGCATGGAACATATTCTGTCAGTACTCCGCACTCCAGCTGAACGTGCAAGTGGATTTGTAGCTCTTGGTGAAATGGCTGGAGCCCTAGATGGAGAGTTGATAAACTATTTGCCGACAATTACGTCACATATACGTGATGCTATCACTCCACGTAGGGGCAAACCTTCTATGGAGGCGCTAGCATGTGCAGGGAGTTTGCAAAAGCTATGGGTCCTGCTATGGAACCTTATATAAGGAACAACTTATTGGATGCCATGTTTTCTGCTGGCCTGTCCGATACCTTGGTGAAAGCCCTTGATCAGATAGCTTCTAGTCTACCTTCTTTACTGCCTTTCGC

Fln Alignment:

AllPineV4_c42526___YREHKDRLVRKSITSLLPRNLHxxxxRFVTSYLKICMEHILSVLRTPAERASGFVALGEMAGALDGELINYLPTITSHIRDAITPRRGKPSMEALACAGSLQK
Q0DJS1_______________YLRHRDQLVRRSITSLLPRIAHxxxxRFVTNYLKICMDHILFVLRTPDERASGFVALGEMAGALGAELVPYLPLITSHLHDAIAPRRGRPSLEAISCVGSFAK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain