SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44194

Length: 1627 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene44194

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-amylase, putative n=1 Tax=Ricinus communis RepID=B9R8H8_RICCO	-	-	70%
FL-Next	sp=Alpha-amylase type B isozyme; Hordeum vulgare (Barley).	-	-	44%
Blast2go	alpha-amylase-like 2	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr histidine phosphorylation site	IPR001020	-	-
Sma3	Phosphoribosylglycinamide formyltransferase, active site	IPR001555	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycoside hydrolase, family 13	IPR006046	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Glycosyl hydrolase, family 13, subfamily, catalytic domain	IPR006589	-	-
Sma3	Alpha-amylase, C-terminal beta-sheet	IPR012850	-	-
Sma3	Alpha-amylase, plant	IPR013775	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P04063

Fln msg:

Fln protein: MGYPVQEVSKEHDQWAGFVEGESVLQRGREILLQGFNWESHKYKWWPNLEAKIPHIAKAGFTSVWLPPAFELLLHPKVTYPETFIL*TLHMVLEYQLKSLLMTMRNKNVRAMADIVIRHGIGCSQGFGGLHNRYDGLTVPWDERAVTRCTGGLGNWSTGDNFHGVPNIDHTQDFVRKDIKDWLRWLRRSVGFQDFRFDFAKGYAAKFVKEYIEASTPMFAVGEYWDSCNYTPPSYHLDKNQDSHRQRIINWIDGTSGISAAFDFTTKGILQEAVKGQCWRLRDHQGKPPGVLGWWPSRAVTFIENHDTGSTQGHWPFPCDHIMEGYAYILTHPGIPTVFYDHFFDWGSSIQNEIIKLMSIRRTQDLNSRSSIEILEASSTVYAAIIGRKVCMKIGDGSWCPHGREWQLATCGHRYAVWHK*

Protein Length: 422

Fln nts: ATGTGGGCCTACTCAAGTGAGGAGCAAATTCTGGGATACCCTGCTGGGACTTGATCCCTTTTGAACAGGAATTATTTAATTTTCCTAATTATTTTAGTTTGCAAGGAAACTTGACTACTCCATCGATTTGTTTACAGTGATCGAAA_-_ATGGGCTATCCAGTTCAGGAGGTATCCAAGGAACACGATCAATGGGCAGGATTTGTTGAAGGTGAAAGTGTGCTTCAAAGAGGAAGGGAGATTCTTCTCCAGGGTTTTAACTGGGAATCACATAAATACAAGTGGTGGCCAAATTTGGAAGCAAAGATCCCGCAcATTGCTAAAGCAGGATTTACATCTGTATGGCTGCCACCTGCTTTTGAATTACTGCTGCACCCCAAGGTTACTTACCCCGAAACATTTATTCTCTGAACTCTGCATATGGTTCTAGAATATCAGCTGAAAAGCTTACTTATGACAATGCGAAATAAAAATGTGAGAGCCATGGCTGACATAGTTATCcgTCaTgGCaTtGGctGCTCTCAGGGGTTTGGAGGCTTGCATAATCGCTATGATGGCTTGaCAGTGCCTTGGGATGAACGTGCTGTTACACGTTGTACTGGTGGACTTGGAAACTGGAGCACAGGGGATAATTTTCATGGAGTACCAAACATTGATCACACCCAAGATTTTGTACGCAAAGACATCAAAGATTGGTTAAGGTGGCTTCGGAGAAGTGTTGGTTTTCAAGATTTTCGATTTGACTTTGCCAAGGGTTATGCAGCAAAATTTGTGAAAGAATATATCGAGGCATCGACCCCCATGTTTGCTGTTGGGGAATATTGGGATTCGTGCAATTATACTCCTCCTAGCTATCATCTTGATAAGAATCAAGATAGCCATAGACAAAGAATAATCAATTGGATTGATGGCACTAGTGGCATCTCTGCGGCATTTGATTTTACAACAAAGGGCATTCTTCAGGAGGCAGTGAAAGGACAATGTTGGCGTTTACGTGATCACCAGGGAAAGCCTCCTGGAGTTCTTGGCTGGTGGCCTTCAAGGGCTGTAACTTTTATTGAAAACCACGACACTGGATCAACACAGGGTCATTGGCCTTTTCCATGTGATCATATTATGGAGGGCTATGCTTACATCTTGACACACCCTGGAATACCAACAGTCTTCTATGACCATTTTTTTGATTGGGGAAGCTCAATACAAAACGAGATTATAAAGCTGATGAGTATTCGGAGAACACAAGATTTAAACAGCCGCTCTTCAATAGAGATTTTAGAGGCCAGTTCAACTGTTTATGCTGCAATTATTGGAAGGAAAGTTTGCATGAAGATTGGAGATGGCTCATGGTGTCCACATGGCAGGGAGTGGCAGCTAGCTACTTGTGGTCATAGATATGCTGTCTGGCACAAGTAA___CATTGTTTTTGCATGTATTTCTAGTTGCTAGATACTAGTGTCTTGTAGTGAATTTATTTCTAGTGGCTAGATACTAGTATTTTGTAGTGAATTAATGTATGTCTATTTTTAACTGTGGAAATGAGATGCATGGGTACGATATACAGATTACATAAAATTTTCTACACGGCTATAGACCTACTCTAGAGGTCTATGTTATGAGCACATCCACGTTGAAA

Fln Alignment:

AllPineV4_c42074___EILLQGFNWESHKYK--WWPNLEAKIPHIAKAGFTSVWLPPAFELLLHPKVTYPETFIL*TLHMVLEYQLKSLLMTMRNKNVRAMADIVIRHGIGCSQGFGGLHNRYDGLT----VPWDERAVTR----CTGGLGNWSTGDNFHGVPNIDHTQDFVRKDIKDWLRWLRRSVGFQDFRFDFAKGYAAKFVKEYIEASTPMFAVGEYWDSCNYTPPSYHLDKNQDSHRQRIINWID--GTSGISAAFDFTTKGILQEAVKGQCWRLRDHQGKPPGVLGWWPSRAVTFIENHDTGSTQGHWPFPCDHIMEGYAYILTHPGIPTVFYDHFFDWGSSIQNEIIKLMSIRRTQDLNSRSSIEILEASSTVYAAIIGRKVCMKIGD----GSWCPHGREWQLATCGHRYAVWHK
P04063_______________QVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRLYDLDASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARLDWGPHMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDGWRFDFAKGYSADVAKIYIDRSEPSFAVAEIWTSLAYGGDGKP-NLNQDQHRQELVNWVDKVGGKGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGMIGWWPAKAVTFVDNHDTGSTQHMWPFPSDRVMQGYAYILTHPGTPCIFYDHFFDWG--LKEEIDRLVSVRTRHGIHNESKLQIIEADADLYLAEIDGKVIVKLGPRYDVGNLIPGG--FKVAAHGNDYAVWEK

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
152	25		75		0.996473
692	16		83		0.994512
699		14		85	0.993533
700	85		14		0.993533
701	85			14	0.993533
702		14	85		0.993533
706	14		85		0.993533
708		14		85	0.993533
710		85		14	0.993533
713	85	14			0.993533
714			85	14	0.993533
715	85		14		0.993533
716	85			14	0.993533
717		14	85		0.993533
718	14			85	0.993533
719		14	85		0.993533
721		14		85	0.993533
722	14		85		0.993533
816	12		87		0.992554
871	85		14		0.993533
900	14	85			0.993533
1048	11		88		0.923564
1178		87		12	0.992554
1355	10			90	0.90298
1356		90		10	0.90298
1357		88	11		0.923564
1358	88		11		0.923564
1359		88	11		0.923564
1423	50		50		1.0
1457		50		50	1.0
1499		50		50	1.0
1517	75			25	0.996474

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain