SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43991

Length: 268 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene43991
CAAAACCCCTTTTGAAGCCTTGTATGGATTTAAACCAGCAGTAAATCACTTAAGAGTTTTGGGTCAAAGGCATTTGCACATGTACCCAAAGCTGATAGAAAGAAACTAGACCCTAAGGCAGTCAAGTGCATCTTTGTTGGTTATGGCACTGAGTTTAAACCATATAAACTATTCAATCCTGAGTCTCGTAAGACATTTGCAAGTAGAGATGTAGTCTTCATGAACAGGTACAGGAAAGGAAAGCTGATGTTGGAGATGATTGGCACAT

Ace file of the UniGene sp_v2.0_unigene43991 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type polyprotein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCE4_CUCME	-	-	2.0e-13	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	retrotransposon ty1-copia subclass	-	-	4.68405e-14	71%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 34 aas, your sequence is shorter than subject: 89 - 407

Fln protein: QNPF*SLVWI*TSSKSLKSFGSKAFAHVPKADRKKLDPKAVKCIFVGYGTEFKPYKLFNPESRKTFASRDVVFMNRYRKGKLMLEMIGT

Protein Length: 90

Fln nts: CAAAACCCCTTTTGAAGCCTTGTATGGATTTAAACCAGCAGTAAATCACTTAAGAGTTTTGGGTCAAAGGCATTTGCACATGTACCCAAAGCTGATAGAAAGAAACTAGACCCTAAGGCAGTCAAGTGCATCTTTGTTGGTTATGGCACTGAGTTTAAACCATATAAACTATTCAATCCTGAGTCTCGTAAGACATTTGCAAGTAGAGATGTAGTCTTCATGAACAGGTACAGGAAAGGAAAGCTGATGTTGGAGATGATTGGCACAT

Fln Alignment:

AllPineV4_c41840___KSFGSKAFAHVPKADRKKLDPKAVKCIFVGYGTEFKPYKLFNPESRKTFASRDVVFMNR
B8LKX7_______________KVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain