SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43920

Length: 343 nt

UniGene Fasta

>sp_v2.0_unigene43920
GGCGTCGTGTCGTTGGCTGTCACTTTGATGGGGGAGTGGCCGCCCCTGGTCAGGCCTCAGAATAATCTGCCTAGTCCTGGAAGCCGGAATCGTGTATTGAATAAACTGTTTTCTTCGAAACAAAGGCTTCTGTCTCTTACGTCGCCACCTCATAAAACGCAGCCACTTACATCTCCAATTGCTGCTACAAATAGTAACACCCAGGAGGAAAGCAAAATCGCTACAGACGAGTCCGAGTCATCCTTGAAAGTTTTCAAGAAACTCATGCCTGGACCAAAGGTGAGGGATGCACTGTTCAGAAAATTCATCGACAAGGAGGATGAAGAACTGGACAAAACACATT

Ace file of the UniGene sp_v2.0_unigene43920

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphatidylinositol 4-kinase, putative n=1 Tax=Ricinus communis RepID=B9RU39_RICCO	-	-	9.0e-24	52%
FL-Next	sp=Phosphatidylinositol 4-kinase beta 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Blast2go	phosphatidylinositol 4-kinase	-	-	1.54233e-27	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	1-phosphatidylinositol 4-kinase.	EC:2.7.1.67	-	1.54233e-27	68%

Source	KEGGs	Term	e value	Identity
Blast2go	Inositol phosphate metabolism	00562	1.54233e-27	68%
Blast2go	Metabolic pathways	01100	1.54233e-27	68%
Blast2go	Phosphatidylinositol signaling system	04070	1.54233e-27	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	root hair cell tip growth	GO:0048768	Biological Process	1.54233e-27	68%
Blast2go	pollen tube growth	GO:0009860	Biological Process	1.54233e-27	68%
Blast2go	phosphatidylinositol phosphorylation	GO:0046854	Biological Process	1.54233e-27	68%
Blast2go	Rab GTPase binding	GO:0017137	Molecular Function	1.54233e-27	68%
Blast2go	1-phosphatidylinositol 4-kinase activity	GO:0004430	Molecular Function	1.54233e-27	68%
Blast2go	protein histidine kinase binding	GO:0043424	Molecular Function	1.54233e-27	68%
Blast2go	cytosol	GO:0005829	Cellular Component	1.54233e-27	68%
Blast2go	cytoplasmic vesicle membrane	GO:0030659	Cellular Component	1.54233e-27	68%
Blast2go	nucleus	GO:0005634	Cellular Component	1.54233e-27	68%
Blast2go	root hair tip	GO:0035619	Biological Process	1.54233e-27	68%

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Phosphatidylinositol Kinase	IPR015433	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FMJ0

Fln msg: Distance to subject end: 873 aas, your sequence is shorter than subject: 114 - 1121

Fln protein: GVVSLAVTLMGEWPPLVRPQNNLPSPGSRNRVLNKLFSSKQRLLSLTSPPHKTQPLTSPIAATNSNTQEESKIATDESESSLKVFKKLMPGPKVRDALFRKFIDKEDEELDKTH

Protein Length: 115

Fln nts: GGCGTCGTGTCGTTGGCTGTCACTTTGATGGGGGAGTGGCCGCCCCTGGTCAGGCCTCAGAATAATCTGCCTAGTCCTGGAAGCCGGAATCGTGTATTGAATAAACTGTTTTCTTCGAAACAAAGGCTTCTGTCTCTTACGTCGCCACCTCATAAAACGCAGCCACTTACATCTCCAATTGCTGCTACAAATAGTAACACCCAGGAGGAAAGCAAAATCGCTACAGACGAGTCCGAGTCATCCTTGAAAGTTTTCAAGAAACTCATGCCTGGACCAAAGGTGAGGGATGCACTGTTCAGAAAATTCATCGACAAGGAGGATGAAGAACTGGACAAAACACATT

Fln Alignment:

AllPineV4_c41757___LAVTLMGEWPPLVRPQNNLPSPGSRNRVLNKLFSSKQRLLSL-TSPPHKTQPLTSPIAATNSNTQEESKIATDESESSLKVFKKLMPGPKVRDAL-FRKFIDKEDEELDK
Q9FMJ0_______________IAATLMGEWSPLMRPQNEVSTPGSKNQVLNRLLSSKQKLFSLKLSPPTQKSLSFSPSPGTNVQDDGSQLPAEDN-----KIFKKLIPSPKVRDALMFRKSADKDDEESEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain