SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43683

Length: 264 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene43683
TTGATGTTATGACAGAGGTTGTGAGGGAGTCAAATGATGCCAATGCAAAGTTTCCTAGTCAGGATCATTCTTGGTTACCGGCCCATCTTCTAGCTCTTGTGGATGTTCCAGAAGCTGCAGTCGCTTTAAAATCATTGCTGGAAGCTCATGGAGGCACATCTGAACAAAGTTCTTGGGAGGTGGGTTGGGCCTTAGCACCTGCAGATAGTGACACTCAATTGCATGGAAATATTTCTCAGAGTCAAGTTGAAAGGAGGCACATAT

Ace file of the UniGene sp_v2.0_unigene43683 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protease DEG15 [Arabidopsis thaliana] sp\|Q8VZD4.2\|DEG15_ARATH RecName: Full=Glyoxysomal processing protease, glyoxysomal; Short=AtDEG15; AltName: Full=DEG-protease gb\|AEE30952.1\| protease DEG15 [Arabidopsis thaliana]	-	-	6.0e-07	50%
FL-Next	sp=Glyoxysomal processing protease, glyoxysomal; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Blast2go	peroxisomal leader peptide-processing protease	-	-	1.20974e-11	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	endopeptidase activity	GO:0004175	Molecular Function	1.20974e-11	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8VZD4

Fln msg: Distance to subject end: 520 aas, your sequence is shorter than subject: 87 - 709

Fln protein: DVMTEVVRESNDANAKFPSQDHSWLPAHLLALVDVPEAAVALKSLLEAHGGTSEQSSWEVGWALAPADSDTQLHGNISQSQVERRHI

Protein Length: 88

Fln nts: TTGATGTTATGACAGAGGTTGTGAGGGAGTCAAATGATGCCAATGCAAAGTTTCCTAGTCAGGATCATTCTTGGTTACCGGCCCATCTTCTAGCTCTTGTGGATGTTCCAGAAGCTGCAGTCGCTTTAAAATCATTGCTGGAAGCTCATGGAGGCACATCTGAACAAAGTTCTTGGGAGGTGGGTTGGGCCTTAGCACCTGCAGATAGTGACACTCAATTGCATGGAAATATTTCTCAGAGTCAAGTTGAAAGGAGGCACATAT

Fln Alignment:

AllPineV4_c41489___WLPAHLLALVDVPEAAVALKSLLEAHGGTSEQSSWEVGWALAPADSDTQLHGNI
Q8VZD4_______________WVPAQLLSLVDVPVSSAALQSLIEASSG-SKDSGWDIGWSLVSAANGSQPSINI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain