SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43535

Length: 275 nt

UniGene Fasta

>sp_v2.0_unigene43535
GAAGACCAGGCACTTGTTGTTCTGGTCCATGATTTTGGTCCTAATTGGGATCTTGTGAGTGATATTATAAATTCTAGTTTGCAAATAAAGTGTATTTTCCGAAAACCAAAGGATTGTAAAGAACGTCATAAAAGTCTTGTGGAGAAAACCACTGGAGATGGTGGTGACAGTCCAGAGGACTCTGGCTCTTCTCAACCTTACCCCTCTACTTTACCTGGCATTCCAAAGGGTAGTGCTAGAATGTTGCTTCATCGCTTACAGGGTCCTATGGAAGA

Ace file of the UniGene sp_v2.0_unigene43535

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S516_RICCO	-	-	5.0e-29	68%
FL-Next	tr=DNA binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	76%
Blast2go	helicase sant- dna binding protein	-	-	5.9114e-35	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	apoplast	GO:0048046	Cellular Component	5.9114e-35	84%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	HSA	IPR006562	-	-
Sma3	HAS subgroup	IPR013999	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	DDT domain superfamily	IPR018501	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9S516

Fln msg: Distance to subject end: 827 aas, your sequence is shorter than subject: 91 - 2009

Fln protein: EDQALVVLVHDFGPNWDLVSDIINSSLQIKCIFRKPKDCKERHKSLVEKTTGDGGDSPEDSGSSQPYPSTLPGIPKGSARMLLHRLQGPME

Protein Length: 92

Fln nts: GAAGACCAGGCACTTGTTGTTCTGGTCCATGATTTTGGTCCTAATTGGGATCTTGTGAGTGATATTATAAATTCTAGTTTGCAAATAAAGTGTATTTTCCGAAAACCAAAGGATTGTAAAGAACGTCATAAAAGTCTTGTGGAGAAAACCACTGGAGATGGTGGTGACAGTCCAGAGGACTCTGGCTCTTCTCAACCTTACCCCTCTACTTTACCTGGCATTCCAAAGGGTAGTGCTAGAATGTTGCTTCATCGCTTACAGGGTCCTATGGAAGA

Fln Alignment:

AllPineV4_c41324___EDQALVVLVHDFGPNWDLVSDIINSSLQIKCIFRKPKDCKERHKSLVEKTTXXXXXXXXXXXXXQPYPSTLPGIPKGSARMLLHRLQGPME
B9S516_______________EDQALVVLVHDMGPNWELVSDAINSTLQFKCIFRKPKECKERHKMLIDKSGGDGYDSADDSRTSQSYPSTLPGIPKGSARQLFQHLQGPME

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain