SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43210

Length: 430 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene43210
AATGTGATATTTTCAAAGATGGAACTTCATTGTCATCTTTGGGAGTTAAATTGCATCTCTTACCATGCAATATTTTTCTAGGGGAGCACCGAACATATGACCATGATAGCAGTTATAGTTTTAAAGAAAGCATTCTTTCTGTTGGCCGAACATTTTCAGCTAACACAGACAATAATTGTGCTCCAGTTTATTTTGAAGAACTTTTGATTGTTTGTCAATTTGGATATGCCAGGGAAATGGGAGTAACCATCAAGCGCATTGAAGGAACATGTGGCGAAGTGTTGGTGAATCTAAATGAGGATATATTTGCAACCAAAACGCTTGCAAAAGAACATGCAGAAGATGTCAATCTAGACAAAGTTGTTGATCCCAGAGCCACAAAGAAATATGAATCCATGGAAATATCAAAAGCAAAAGAAAGCTTTCCCAT

Ace file of the UniGene sp_v2.0_unigene43210 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TPA_exp: SAB [Arabidopsis thaliana]	-	-	3.0e-10	29%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	34%
Blast2go	golgi-body localisation and rna pol ii promoter fmp27 domain-containing protein	-	-	8.22449e-15	51%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell growth	GO:0016049	Biological Process	8.22449e-15	51%
Blast2go	cell part	GO:0044464	Cellular Component	8.22449e-15	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H148

Fln msg: Distance to subject end: 2344 aas, your sequence is shorter than subject: 142 - 2651

Fln protein: CDIFKDGTSLSSLGVKLHLLPCNIFLGEHRTYDHDSSYSFKESILSVGRTFSANTDNNCAPVYFEELLIVCQFGYAREMGVTIKRIEGTCGEVLVNLNEDIFATKTLAKEHAEDVNLDKVVDPRATKKYESMEISKAKESFP

Protein Length: 143

Fln nts: AATGTGATATTTTCAAAGATGGAACTTCATTGTCATCTTTGGGAGTTAAATTGCATCTCTTACCATGCAATATTTTTCTAGGGGAGCACCGAACATATGACCATGATAGCAGTTATAGTTTTAAAGAAAGCATTCTTTCTGTTGGCCGAACATTTTCAGCTAACACAGACAATAATTGTGCTCCAGTTTATTTTGAAGAACTTTTGATTGTTTGTCAATTTGGATATGCCAGGGAAATGGGAGTAACCATCAAGCGCATTGAAGGAACATGTGGCGAAGTGTTGGTGAATCTAAATGAGGATATATTTGCAACCAAAACGCTTGCAAAAGAACATGCAGAAGATGTCAATCTAGACAAAGTTGTTGATCCCAGAGCCACAAAGAAATATGAATCCATGGAAATATCAAAAGCAAAAGAAAGCTTTCCCAT

Fln Alignment:

AllPineV4_c40903___DIFKDGTSLSSLGVKLHLLPCNIFLGEHRTYDHDSSYSFKESILSVGRTFSANTDNNCAPVYFEELLIVCQFGYAREMGVTIKRIEGTCGEVLVNLNEDIFATKTLAKEH--------AEDVNLDKVVDPRATKKYESMEISKAKESFP
F6H148_______________DISKDGGSKPTLFVKLQVLPLVVHVGDPRL-TCDQSSNFNQGSVSAGQPSFCMMERSSAPFYCEELSLSCEFGHDSEVGVIIKNVDIAIGEVAVNLNEELFVKNKSSADNFTHTDKVTGSTVNSGTSAEPPKNKALSS--LSKYTSMFP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
321	33		66		0.997452
326		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain