SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43148

Length: 405 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene43148
CGTCGTGACCTTGGCTGTCACTCAGGGGGCTTGAACCTTGGATGTATGGCTTTCAACTGCAAGTCAGTTTGTATGGCTTTCTCACCTGCTGCATCTGCTGCCACCTCTAATATTTCTGCCGATTCGCCCCTGACTCTCATCGCTCGCAAATTGGAGAGGCACTTCAGCATGCAAGGAGGCAAGGGCGAAACCAGCTATGCAAAAAATTGTCAGGGCCAGGCCAAGCATCTGCGTTCTCTGAGGCCCTTGTTAGAAGAGGCTCTTGATAACATGGATCTCCCACCATCAGAGGAGCTCTTCACCATTGCTGACCTGGGTTGCTCTTCCGGGCAGAATACGTTGGTGATCGCTAATCACATAGTCAGTTACTTCGCCAACAAATACAATCTCGGCTCGCTGAATCTG

Ace file of the UniGene sp_v2.0_unigene43148

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein [Arabidopsis thaliana] dbj\|BAF01714.1\| S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein [Arabidopsis thaliana]	-	-	6.0e-14	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	s-adenosyl-l-methionine:salicylic acid carboxyl methyltransferase-like protein	-	-	1.31762e-16	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	1.31762e-16	64%
Blast2go	auxin homeostasis	GO:0010252	Biological Process	1.31762e-16	64%
Blast2go	identical protein binding	GO:0042802	Molecular Function	1.31762e-16	64%
Blast2go	indole acetic acid carboxyl methyltransferase activity	GO:0051749	Molecular Function	1.31762e-16	64%
Blast2go	S-adenosylmethionine-dependent methyltransferase activity	GO:0008757	Molecular Function	1.31762e-16	64%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	1.31762e-16	64%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNJ2

Fln msg: Distance to subject end: 263 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 120 - 355

Fln protein: MAFNCKSVCMAFSPAASAATSNISADSPLTLIARKLERHFSMQGGKGETSYAKNCQGQAKHLRSLRPLLEEALDNMDLPPSEELFTIADLGCSSGQNTLVIANHIVSYFANKYNLGSLNL

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGGGCTTGAACCTTGGATGT_-_ATGGCTTTCAACTGCAAGTCAGTTTGTATGGCTTTCTCACCTGCTGCATCTGCTGCCACCTCTAATATTTCTGCCGATTCGCCCCTGACTCTCATCGCTCGCAAATTGGAGAGGCACTTCAGCATGCAAGGAGGCAAGGGCGAAACCAGCTATGCAAAAAATTGTCAGGGCCAGGCCAAGCATCTGCGTTCTCTGAGGCCCTTGTTAGAAGAGGCTCTTGATAACATGGATCTCCCACCATCAGAGGAGCTCTTCACCATTGCTGACCTGGGTTGCTCTTCCGGGCAGAATACGTTGGTGATCGCTAATCACATAGTCAGTTACTTCGCCAACAAATACAATCTCGGCTCGCTGAATCTG

Fln Alignment:

AllPineV4_c40824___IARKLERHFSMQGGKGETSYAKNC-QGQAKHLRSLRPLLEEALDNMDLPPSEELFTIADLGCSSGQNTLVIANHIVSYFANKY
B8LNJ2_______________IDMEMERVFRMNAGLGDSSYAQNSILLQRRGLEIVEPVLEEAILSMKMMSEFNTFCIADLGCSSGPNALFTAENITKTLKAKY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
290	25			75	0.996479

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain