SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43018

Length: 342 nt

UniGene Fasta

>sp_v2.0_unigene43018
AAACCACAGAGTTCATACACTTTATGTAGGAGATAGGTCTGACCTTCTGTCCGTGGAAATTTATGCAATGTTGGAGAGCTTGGCTGGTCAGATGAAGGAGGCAGGGTATTCAGCTAACACGGATGCTGTTCTTCACAATGTGGAGGACGAGGAGAAGGAACAAATGCTTGGCAGTCATAGTGAGAAGCTAGCCATTGCCTTCGGCCTTATTACTACAAACCCTGATACTCCTATCCAAATCACAAAAAACCTCCGTGTGTGTGATGACTGCCACAGTGCCACTAAGTTCATCTCCATGATTTTGAGACGACAAATTATAGTGAGGGATGCAAATCGCTTCCA

Ace file of the UniGene sp_v2.0_unigene43018

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE	-	-	1.0e-34	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	pentatricopeptide repeat protein	-	-	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A804

Fln msg: STOP codon was not found. Distance to subject end: 13 aas, your sequence is shorter than subject: 113 - 246

Fln protein: NHRVHTLYVGDRSDLLSVEIYAMLESLAGQMKEAGYSANTDAVLHNVEDEEKEQMLGSHSEKLAIAFGLITTNPDTPIQITKNLRVCDDCHSATKFISMILRRQIIVRDANRF

Protein Length: 114

Fln nts: AAACCACAGAGTTCATACACTTTATGTAGGAGATAGGTCTGACCTTCTGTCCGTGGAAATTTATGCAATGTTGGAGAGCTTGGCTGGTCAGATGAAGGAGGCAGGGTATTCAGCTAACACGGATGCTGTTCTTCACAATGTGGAGGACGAGGAGAAGGAACAAATGCTTGGCAGTCATAGTGAGAAGCTAGCCATTGCCTTCGGCCTTATTACTACAAACCCTGATACTCCTATCCAAATCACAAAAAACCTCCGTGTGTGTGATGACTGCCACAGTGCCACTAAGTTCATCTCCATGATTTTGAGACGACAAATTATAGTGAGGGATGCAAATCGCTTCCA

Fln Alignment:

AllPineV4_c40665___NHRVHTLYVGDRSDLLSVEIYAMLESLAGQMKEAGYSANTDAVLHNVEDEEKEQMLGSHSEKLAIAFGLITTNPDTPIQITKNLRVCDDCHSATKFISMILRRQIIVRDANRF
D5A804_______________NNSVHTFHMEDRSHPQSQGIYLMLESLVGQMKEAGYVPNLDSVFNNVEDDVKERMLMGHSEKLAIAFGLINTNSGTPLRITKSLRVCDDCHNAAKIISKVVEREITLRGAHRF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain