SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42307

Length: 531 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene42307
CCGTTTGCTTTTAGAGTTATGTGAGGCCCGAGGATTTATATTGGATATTTCAAGCAATAAGGCCCTTGCAGCTTCTCTTCATCTTATGCGGGACAGTAATGATCCAATAATTGAGAGCGCATTCAAAGCATTGGCTACTCGAGCAATGTCAGAGGCTGAATATATATCAACCGGAGAGGTACCAGAGCCTTCTGCTTTTTACCATTATGGTCTGGCTTTGAAGTTCTACACACATTTCACATCTCCAATTCGACGATATGCAGACATAATAGTGCATAGAATGCTTGTTGAATCATGTTCAATCACCACTTCTGACCAGGGGTCCAAGGATAAGAACAGTGTTTCTTTGGAGAAATTTGGACATAGTCTAGTCAGCTCTGACGACTTGAAAGAGGTAGCAGATCATCTAAATCAACGCCATAGGGCAAGCAAGAGAGCACAAAACAGTGCAGTGAGTTGCACCTTTTGATGTACTTACAGAAACATGCTGAAACATTATGCCTTGGATTAGAAATTCTCGAAAGGGGTCTT

Ace file of the UniGene sp_v2.0_unigene42307

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: DIS3-like exonuclease 1-like n=1 Tax=Sus scrofa RepID=UPI0001E8641A	-	-	2.0e-28	46%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	61%
Blast2go	dis3-like exonuclease 1	-	-	2.60075e-39	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonuclease II/R	IPR001900	-	0.0	-
Sma3	Protein of unknown function DUF167	IPR003746	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8T0A4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 275 aas, your sequence is shorter than subject: 156 - 1284

Fln protein: RLLLELCEARGFILDISSNKALAASLHLMRDSNDPIIESAFKALATRAMSEAEYISTGEVPEPSAFYHYGLALKFYTHFTSPIRRYADIIVHRMLVESCSITTSDQGSKDKNSVSLEKFGHSLVSSDDLKEVADHLNQRHRASKRAQNSAVSCTF*

Protein Length: 157

Fln nts: CCGTTTGCTTTTAGAGTTATGTGAGGCCCGAGGATTTATATTGGATATTTCAAGCAATAAGGCCCTTGCAGCTTCTCTTCATCTTATGCGGGACAGTAATGATCCAATAATTGAGAGCGCATTCAAAGCATTGGCTACTCGAGCAATGTCAGAGGCTGAATATATATCAACCGGAGAGGTACCAGAGCCTTCTGCTTTTTACCATTATGGTCTGGCTTTGAAGTTCTACACACATTTCACATCTCCAATTCGACGATATGCAGACATAATAGTGCATAGAATGCTTGTTGAATCATGTTCAATCACCACTTCTGACCAGGGGTCCAAGGATAAGAACAGTGTTTCTTTGGAGAAATTTGGACATAGTCTAGTCAGCTCTGACGACTTGAAAGAGGTAGCAGATCATCTAAATCAACGCCATAGGGCAAGCAAGAGAGCACAAAACAGTGCAGTGAGTTGCACCTTTTGATGTACTTACAGAAACATGCTGAAACATTATGCCTTGGATTAGAAATTCTCGAAAGGGGTCTT

Fln Alignment:

AllPineV4_c39660___LAASLHLMRDSNDPIIESAFKALATRAMSEAEYISTGEVPEPSAFYHYGLALKFYTHFTSPIRRYADIIVHRMLVESCSITTSDQGSKDKNSVSLEKFGHSLVSSDDLKEVADHLNQRHRASKRAQ
D8T0A4_______________LAASLDRMRDSGDFVVERAFRALVTRAMSEAEYFSTGENLEPSHFYHYGLALEFYTHFTSPIRRYADILAHRMLIAACQEQNLESG--------IVKVPH-IMSSIELQEVAEHLNEKHRTSKRAQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain