SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42130

Length: 237 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene42130
AATGTAAAGAAAAATACCTTTCCTATCACAGCGAGAAGTTGGCTGTGGCGTTTGGCATTATCAATATATCCCCAGGAACACCAATAAGAATTGTCAAAAACCTCAGGGTATGTGGTGACTGTCACACTGCAATCAAGTTCATTTCCAATACTGCTGAGCGAGAAATCATTCTGAGGGATTCAAATCGCTTCCATCATTTCAAAGATGGAGTATGTTCTTGCGGAGATTATTGGTAAA

Ace file of the UniGene sp_v2.0_unigene42130

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to Tetratricopeptide-like helical n=1 Tax=Vitis vinifera RepID=UPI0001984A05	-	-	9.0e-29	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.10985e-37	83%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	2,3-diketo-5-methylthio-1-phosphopentane phosphatase	IPR010041	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: your sequence is shorter than subject: 78 - 246

Fln protein: CKEKYLSYHSEKLAVAFGIINISPGTPIRIVKNLRVCGDCHTAIKFISNTAEREIILRDSNRFHHFKDGVCSCGDYW*

Protein Length: 79

Fln nts: AATGTAAAGAAAAATACCTTTCCTATCACAGCGAGAAGTTGGCTGTGGCGTTTGGCATTATCAATATATCCCCAGGAACACCAATAAGAATTGTCAAAAACCTCAGGGTATGTGGTGACTGTCACACTGCAATCAAGTTCATTTCCAATACTGCTGAGCGAGAAATCATTCTGAGGGATTCAAATCGCTTCCATCATTTCAAAGATGGAGTATGTTCTTGCGGAGATTATTGGTAA___A

Fln Alignment:

AllPineV4_c39407___KEKYLSYHSEKLAVAFGIINISPGTPIRIVKNLRVCGDCHTAIKFISNTAEREIILRDSNRFHHFKDGVCSCGDYW
D5AAE0_______________KEHSLYHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

SNPs (tot: 3)

Position	A %	G %	T %	Probability
44	33		66	0.997464
45	33	66		0.997464
48		66	33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain