SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42125

Length: 345 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene42125
TGTACACTCATCAGCAAGAAGGGTTTGAGTTCCTGTGGAGAAACCTTGGGGGAGGACTGATTCCAGAAAAGATTAAGCCTCCTACATCTGAAGAGGTAGGAGGTTGTATTATCTCTCATGCTCCAGGGACAGGAAAAACATTTCTCATCATAAGTTTTCTTAGGACCTACCTGGAATTCTTCCCAAGAAGCAGACCTCTCATTATTGCTCCATTTAACATGCTTTTACCTTGGGAACGAGAGTTCAAGAAGTGGGGTGTAGACATTCCAGTATACATGCTAAATAGATCGAAAACCTTTTGGAAAGAATTATGTTCTAATGATGAACATACAGACATTGTTCACA

Ace file of the UniGene sp_v2.0_unigene42125

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chromatin remodeling complex subunit (Fragment) n=1 Tax=Populus trichocarpa RepID=B9MV63_POPTR	-	-	4.0e-28	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	57%
Blast2go	chromatin remodeling complex subunit	-	-	8.76046e-33	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	gene silencing by RNA	GO:0031047	Biological Process	8.76046e-33	73%
Blast2go	nucleolus	GO:0005730	Cellular Component	8.76046e-33	73%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HTE8

Fln msg: Distance to subject end: 468 aas, your sequence is shorter than subject: 114 - 645

Fln protein: YTHQQEGFEFLWRNLGGGLIPEKIKPPTSEEVGGCIISHAPGTGKTFLIISFLRTYLEFFPRSRPLIIAPFNMLLPWEREFKKWGVDIPVYMLNRSKTFWKELCSNDEHTDIVH

Protein Length: 115

Fln nts: TGTACACTCATCAGCAAGAAGGGTTTGAGTTCCTGTGGAGAAACCTTGGGGGAGGACTGATTCCAGAAAAGATTAAGCCTCCTACATCTGAAGAGGTAGGAGGTTGTATTATCTCTCATGCTCCAGGGACAGGAAAAACATTTCTCATCATAAGTTTTCTTAGGACCTACCTGGAATTCTTCCCAAGAAGCAGACCTCTCATTATTGCTCCATTTAACATGCTTTTACCTTGGGAACGAGAGTTCAAGAAGTGGGGTGTAGACATTCCAGTATACATGCTAAATAGATCGAAAACCTTTTGGAAAGAATTATGTTCTAATGATGAACATACAGACATTGTTCACA

Fln Alignment:

AllPineV4_c39401___YTHQQEGFEFLWRNLGGGLIPEKIKPPTSEEVG-GCIISHAPGTGKTFLIISFLRTYLEFFPRSRPLIIAPFNMLLPWEREFKKWGVDIPVYMLNRSKTFWKE
F6HTE8_______________YRHQCEGFEFIWKNVAGGIYLDELKRSSFSDGGSGCIISHAPGTGKTRLTIVFLQTYMELYPACRPVIIAPRTMLLTWEEEFKKWNVDIPFHNLNKLEYSGKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain