SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42109

Length: 380 nt

UniGene Fasta

>sp_v2.0_unigene42109
CAACAATGCCATAGCAGTGTCTGTGTCTACAGTGATTGGGGCTGATGAGAGGATGCTTTTAGAAATTCCAGCACTGATGGTCCAACCATTGAGACTAATGAAGGGAAGATTTCAGGTTACTACTATTCGTATCAATTTTATAATAGATGACAGTGTTGAAGTTGGGGATACTTATAAGGGAGAGTCTGACTCTAGGCTGGAGAATAAAACAGTAGGAAGAGACCGAAGTTGGTTGATTGCTGCTCTTCATGAAGTTTATAGTCGAAGATATCTTCTTAGGAGAAGTGCACTGGAACTGTTCATGATTGATCGGTCAAACTTCTTTTTCAACTTTGGGACTACAGAAGGACGTAGAAAGGTCTATAAAGCCATTGTTCAAG

Ace file of the UniGene sp_v2.0_unigene42109

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	beige-related and WD-40 repeat-containing protein [Arabidopsis thaliana] gb\|AAC06163.1\| unknown protein [Arabidopsis thaliana] gb\|AEC10567.1\| beige-related and WD-40 repeat-containing protein [Arabidopsis thaliana]	-	-	2.0e-24	53%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%
Blast2go	beige-related and wd-40 repeat-containing protein	-	-	2.10876e-28	76%

Source	InterPros	Term	Type	Identity
Sma3	BEACH domain	IPR000409	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6I330

Fln msg: Distance to subject end: 765 aas, your sequence is shorter than subject: 126 - 3254

Fln protein: NNAIAVSVSTVIGADERMLLEIPALMVQPLRLMKGRFQVTTIRINFIIDDSVEVGDTYKGESDSRLENKTVGRDRSWLIAALHEVYSRRYLLRRSALELFMIDRSNFFFNFGTTEGRRKVYKAIVQ

Protein Length: 127

Fln nts: CAACAATGCCATAGCAGTGTCTGTGTCTACAGTGATTGGGGCTGATGAGAGGATGCTTTTAGAAATTCCAGCACTGATGGTCCAACCATTGAGACTAATGAAGGGAAGATTTCAGGTTACTACTATTCGTATCAATTTTATAATAGATGACAGTGTTGAAGTTGGGGATACTTATAAGGGAGAGTCTGACTCTAGGCTGGAGAATAAAACAGTAGGAAGAGACCGAAGTTGGTTGATTGCTGCTCTTCATGAAGTTTATAGTCGAAGATATCTTCTTAGGAGAAGTGCACTGGAACTGTTCATGATTGATCGGTCAAACTTCTTTTTCAACTTTGGGACTACAGAAGGACGTAGAAAGGTCTATAAAGCCATTGTTCAAG

Fln Alignment:

AllPineV4_c39381___DERMLLEIPALMVQPLRLMKGRFQVTTIRINFIIDDSVEVGDTYKGESDSRLENKTVGRDRSWLIAALHEVXXXXXXXXXXALELFMIDRSNFFFNFGTTEGRRKVYKAIVQ
F6I330_______________DERIVLELSSSMVRPLRVVRGTFQITTRRINFIVDNTECNGDGLDCSSEIRDQEK----DRSWLMSSLHQIFSRRYLLRRSALELFMIDRSNFFFDFGSTEGRRNAYRAIVQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
291		66	33		0.997452
292			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain