SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42078

Length: 382 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene42078
ATATGCAGATATGGTCAAAGGACCAGAAGGTATAACTGGGATCTGCATGGTTGTTCTGATGGCAACTGCATTCACACTTGCAACTCGATGGTTCAGAAGAAATGTTGTTAAGCTTCCGCGACCTTTCAACAGATTGACAGGGTTCAACGCCTTCTGGTATTCACACCATCTTCTGGTGATTGTATACATTCTGCTCATCGTCCATGGGATCAGGGTCTACCTAGAGCACATATGGTACAAGAAAACAACATGGATGTATCTTGCTGTACCATTGTTACTCTATGCGGGTGAGAGGACGCTCAGAGCTTTGAGGTCTGGATATTACTCTGTACAAATATTGAAGTTCTCAATATATCCTGGAAACGTTTTGAGCGTTATAATG

Ace file of the UniGene sp_v2.0_unigene42078

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADPH oxidase [Pyrus pyrifolia]	-	-	9.94922e-44	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	nadph oxidase	-	-	0.0	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	NAD(P)H oxidase.	EC:1.6.3.1	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	defense response by callose deposition	GO:0052542	Biological Process	87%
Blast2go	respiratory burst involved in defense response	GO:0002679	Biological Process	87%
Blast2go	regulation of stomatal movement	GO:0010119	Biological Process	87%
Blast2go	negative regulation of programmed cell death	GO:0043069	Biological Process	87%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	87%
Blast2go	defense response to fungus	GO:0050832	Biological Process	87%
Blast2go	hydrogen peroxide biosynthetic process	GO:0050665	Biological Process	87%
Blast2go	NAD(P)H oxidase activity	GO:0016174	Molecular Function	87%
Blast2go	integral to plasma membrane	GO:0005887	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b245, heavy chain	IPR000778	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	FAD-binding 8	IPR013112	-	-
Sma3	Ferric reductase, NAD binding	IPR013121	-	-
Sma3	Flavoprotein transmembrane component	IPR013130	-	-
Sma3	NADPH oxidase Respiratory burst	IPR013623	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABF5

Fln msg: Distance to subject end: 289 aas, your sequence is shorter than subject: 124 - 358

Fln protein: MVKGPEGITGICMVVLMATAFTLATRWFRRNVVKLPRPFNRLTGFNAFWYSHHLLVIVYILLIVHGIRVYLEHIWYKKTTWMYLAVPLLLYAGERTLRALRSGYYSVQILKFSIYPGNVLSVIM

Protein Length: 125

Fln nts: ATATGCAGAT_-_ATGGTCAAAGGACCAGAAGGTATAACTGGGATCTGCATGGTTGTTCTGATGGCAACTGCATTCACACTTGCAACTCGATGGTTCAGAAGAAATGTTGTTAAGCTTCCGCGACCTTTCAACAGATTGACAGGGTTCAACGCCTTCTGGTATTCACACCATCTTCTGGTGATTGTATACATTCTGCTCATCGTCCATGGGATCAGGGTCTACCTAGAGCACATATGGTACAAGAAAACAACATGGATGTATCTTGCTGTACCATTGTTACTCTATGCGGGTGAGAGGACGCTCAGAGCTTTGAGGTCTGGATATTACTCTGTACAAATATTGAAGTTCTCAATATATCCTGGAAACGTTTTGAGCGTTATAATG

Fln Alignment:

AllPineV4_c39338___GIRVYLEHIWYKKTTWMYLAVPLLLYAGERTLRALRSGYYSVQILKFSIYPGNVLSVIM
D5ABF5_______________GVFLYLTHKWYKKTTWMYLAVPVLLYGGERILRAFRSGSKPVQILKVAIYPGNVLTLHM

SNPs (tot: 3)

Position	C %	G %	T %	Probability
170	66	33		0.997452
171		33	66	0.997452
172		33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain