SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42037

Length: 433 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene42037
GCAGGTACATGCTTGCATCATGAATGTTGGCCTAGAATCAAATGTCTTTATAGGAAGTGCCCTTGTTGACATGTATTCCAAATGCGGCAATGTAAATTTTGCACGCCGAGTGTTTGACGAAATGGTTGAACAAGATGTGGTTTTGTGGAATGCTATAATAGCTGGATATGCCCTAAATGGGAGTAGCGAAGAAGCCCTCGAACTGTTTGAACACATGCTACAAGCTGGAAAGAGGCCAGACTACATTACATTCATTGCTGTCCTTAATGGCAGCATCAAAGAAGGACTCGTTCATGCAGGCTACCGCTATTTTGAGTCAATGGATAGAGATCATTATATCACTCCAAGAGTGGAACATTATGCCTGTATGATTAACCTCCTTGGTAGTACCGGGCACATGGATGAGGTAGAGAAATTCATCGACAACATGCCA

Ace file of the UniGene sp_v2.0_unigene42037 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group] gb\|EEC72563.1\| hypothetical protein OsI_05996 [Oryza sativa Indica Group]	-	-	4.0e-35	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	pentatricopeptide repeat-containing protein	-	-	6.02558e-44	69%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3		IPR003612	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 208 aas, your sequence is shorter than subject: 144 - 370

Fln protein: QVHACIMNVGLESNVFIGSALVDMYSKCGNVNFARRVFDEMVEQDVVLWNAIIAGYALNGSSEEALELFEHMLQAGKRPDYITFIAVLNGSIKEGLVHAGYRYFESMDRDHYITPRVEHYACMINLLGSTGHMDEVEKFIDNMP

Protein Length: 145

Fln nts: GCAGGTACATGCTTGCATCATGAATGTTGGCCTAGAATCAAATGTCTTTATAGGAAGTGCCCTTGTTGACATGTATTCCAAATGCGGCAATGTAAATTTTGCACGCCGAGTGTTTGACGAAATGGTTGAACAAGATGTGGTTTTGTGGAATGCTATAATAGCTGGATATGCCCTAAATGGGAGTAGCGAAGAAGCCCTCGAACTGTTTGAACACATGCTACAAGCTGGAAAGAGGCCAGACTACATTACATTCATTGCTGTCCTTAATGGCAGCATCAAAGAAGGACTCGTTCATGCAGGCTACCGCTATTTTGAGTCAATGGATAGAGATCATTATATCACTCCAAGAGTGGAACATTATGCCTGTATGATTAACCTCCTTGGTAGTACCGGGCACATGGATGAGGTAGAGAAATTCATCGACAACATGCCA

Fln Alignment:

AllPineV4_c39290___QVHACIMNVGLESNVFIGSALVDMYSKCGNVNFARRVFDEMVEQDVVLWNAIIAGYALNGSSEEALELFEHMLQAGKRPDYITFIAVLNGSIKEGLVHAGYRYFESMDRDHYITPRVEHYACMINLLGSTGHMDEVEKFIDNMP
A9P0W0_______________QVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain