SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41753

Length: 418 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene41753
ATAGAGAAACCACAATTACAACAGATGTTGAGCCAAGCCATGAGCAACTGCGGAATCTCCACCAATGTATCCGAAAGGTGACCGAGGAGATAGAAGGGACACGATTACAACACTGCAATCTCAGCAATGATGGAGTTCGTAAATGCAGCTTATAAGTGGGACAACTCATCCAAGATCAATCCTAGAAAAATTTGTTCTACTTCTTTCTCCCTTTGCACCACATATAGCTGAAGAGTTATGGCAACGTCTGGGACATGCTGATTCACTTGCATATGAGCCATGGCCAGAGGCCGAAGAGCAGTACCTGAAGGATGATATGATTGTGCTTCCTATTCAAATAAACGGGAAAACCCGAGGAAAACTACAACTTCGAGAAGGATCTGGGAGGAAGAAGCTTTTGCGGCTGTGGTTCAAGACA

Ace file of the UniGene sp_v2.0_unigene41753 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative leucyl-tRNA synthetase [Oryza sativa Japonica Group]	-	-	1.0e-32	62%
FL-Next	tr=Leucyl-tRNA synthetase, putative, expressed; Triticum aestivum (Wheat).	-	-	0.0	58%
Blast2go	leucyl-trna synthetase	-	-	3.01292e-34	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	3.01292e-34	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.01292e-34	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	3.01292e-34	80%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Aminoacyl-tRNA synthetase, class Ia	IPR002300	-	-
Sma3	Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial	IPR002302	-	-
Sma3	Threonyl/alanyl tRNA synthetase, SAD	IPR012947	-	-
Sma3	Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding	IPR013155	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Methionyl/Leucyl tRNA synthetase	IPR015413	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, N-terminal	IPR018164	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, core domain	IPR018165	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8L9T4

Fln msg: Separated hits, possible frame ERROR between 104 and 106, and overlapping frame ERROR between 174 and 164, Distance to subject end: 34 aas, your sequence is shorter than subject: 140 - 965

Fln protein: RETTITTDVEPSHEQLRNLHQCIRKVTEEIEGTxxYNTAISAMMEFVNAAYKWxxxxxxSILEKFVLLLSPFAPHIAEELWQRLGHADSLAYEPWPEAEEQYLKDDMIVLPIQINGKTRGKLQLREGSGRKKLLRLWFKT

Protein Length: 141

Fln nts: ATAGAGAAACCACAATTACAACAGATGTTGAGCCAAGCCATGAGCAACTGCGGAATCTCCACCAATGTATCCGAAAGGTGACCGAGGAGATAGAAGGGACACGxxxTTACAACACTGCAATCTCAGCAATGATGGAGTTCGTAAATGCAGCTTATAAGTGGGxxxxxxxxxxxxxxxGATCAATCCTAGAAAAATTTGTTCTACTTCTTTCTCCCTTTGCACCACATATAGCTGAAGAGTTATGGCAACGTCTGGGACATGCTGATTCACTTGCATATGAGCCATGGCCAGAGGCCGAAGAGCAGTACCTGAAGGATGATATGATTGTGCTTCCTATTCAAATAAACGGGAAAACCCGAGGAAAACTACAACTTCGAGAAGGATCTGGGAGGAAGAAGCTTTTGCGGCTGTGGTTCAAGACA

Fln Alignment:

AllPineV4_c38925___RETTITTDVEPSHEQLRNLHQCIRKVTEEIEGTRxYNTAISAMMEFVNAAYKWDxxxxSILEKFVLLLSPFAPHIAEELWQRLGHADSLAYEPWPEAEEQYLKDDMIVLPIQINGKTRGKL
D8L9T4_______________KDGTTATDVEPTFEQLRVLHKCIARVSEEIQETRxFNTAISAMMEFVNAAYKWDxxxxSVIDSFVLLLAPFAPHLAEELWFRLGHSQSLAHEQFPEAKNEYLKESEIVLPVQINGKTRGTI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
314	80	20			0.995493
317			20	20	0.99255
318		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain