SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41700

Length: 587 nt

Origin of reads: Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene41700

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LRR receptor-like serine/threonine-protein kinase RCH1 n=2 Tax=Arabidopsis RepID=RCH1_ARATH	-	-	6.0e-38	47%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	38%
Blast2go	lrr receptor-like serine threonine-protein kinase rch1-like	-	-	6.44597e-43	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	6.44597e-43	59%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
228		33	66		1.0
230			33	66	1.0
231		33	66		1.0
232	33		66		1.0
237		33	66		1.0
239		33		66	1.0
240		33	66		1.0
241		33	66		1.0
245	33			66	1.0
246	33	66			1.0
248		33	66		1.0
249	33			66	1.0
257	25		75		0.996473
264		25		75	0.996473
290		25		75	0.996473
326	20			80	0.995493
479	25		75		0.996486
482	25		75		0.996481

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain