SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41679

Length: 574 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene41679
TTCGTTCGGGGATGCGATGGGTCTATTCTCATAGATTCCACGGCCACCAACATTGCAGAGAAAGATAGTCCTGTTAACAATCCGAGCCTTCACGGGTTTGACGTGATTGACAGAGCGAAATCGCGATTAGAAGCCATGTGCCCAAACACTGTTTCTTGTGCAGATATCCTAGCATTTGCTGCTAGAGATAGCGCAAAGCTGGCATCACCATATAATCTTCCTCTAAGCTGGGATGTGCCGGCTGGGCGAAGGGATGGAATTATTTCACTGGCTTCAGAAGTCCTGACAAATATACCTGCCCCTACCTTTAATCTAAGCCAGTTGACACAGAGTTTTGCAGCGAAGGGTCTATCCCAGGAAGAGATGATTATACTCTCAGGAGCACACTCAATTGGCGTCTCTCACTGTTCTTCATTCGTGACCAGGCTCTACAACTTCAGCAGCACTATTCAGACTGATCCATCTATTGATCCTCAGTATGCTGGCCTACTCAAGGAGAAGTGTCCTCAGGGAAGCCCCCAGCAACAACATCACTACCGTGTTCATGAATATTATTACGCCCGAAACTCTCGAC

Ace file of the UniGene sp_v2.0_unigene41679

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase 5 n=1 Tax=Vitis vinifera RepID=PER5_VITVI	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	peroxidase	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Natural resistance-associated macrophage protein	IPR001046	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Auxin responsive SAUR protein	IPR003676	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Ethylene-insensitive 2	IPR017187	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1P4

Fln msg: Distance to subject end: 68 aas, your sequence is shorter than subject: 191 - 324

Fln protein: FVRGCDGSILIDSTATNIAEKDSPVNNPSLHGFDVIDRAKSRLEAMCPNTVSCADILAFAARDSAKLASPYNLPLSWDVPAGRRDGIISLASEVLTNIPAPTFNLSQLTQSFAAKGLSQEEMIILSGAHSIGVSHCSSFVTRLYNFSSTIQTDPSIDPQYAGLLKEKCPQGSPQQQHHYRVHEYYYARNSR

Protein Length: 192

Fln nts: TTCGTTCGGGGATGCGATGGGTCTATTCTCATAGATTCCACGGCCACCAACATTGCAGAGAAAGATAGTCCTGTTAACAATCCGAGCCTTCACGGGTTTGACGTGATTGACAGAGCGAAATCGCGATTAGAAGCCATGTGCCCAAACACTGTTTCTTGTGCAGATATCCTAGCATTTGCTGCTAGAGATAGCGCAAAGCTGGCATCACCATATAATCTTCCTCTAAGCTGGGATGTGCCGGCTGGGCGAAGGGATGGAATTATTTCACTGGCTTCAGAAGTCCTGACAAATATACCTGCCCCTACCTTTAATCTAAGCCAGTTGACACAGAGTTTTGCAGCGAAGGGTCTATCCCAGGAAGAGATGATTATACTCTCAGGAGCACACTCAATTGGCGTCTCTCACTGTTCTTCATTCGTGACCAGGCTCTACAACTTCAGCAGCACTATTCAGACTGATCCATCTATTGATCCTCAGTATGCTGGCCTACTCAAGGAGAAGTGTCCTCAGGGAAGCCCCCAGCAACAACATCACTACCGTGTTCATGAATATTATTACGCCCGAAACTCTCGAC

Fln Alignment:

AllPineV4_c38822___FVRGCDGSILIDSTATNIAEKDSPVNNPSLHGFDVIDRAKSRLEAMCPNTVSCADILAFAARDSAK-LASPYNLPLSWDVPAGRRDGIISLASEVLTNIPAPTFNLSQLTQSFAAKGLSQEEMIILSGAHSIGVSHCSSFVTRLYNFSSTIQTDPSIDPQYAGLLKEKCPQG
A9P1P4_______________FVRGCDGSVLLNSTKSRKAEKEA-APNLTLRGFQVIDAAKAAVEKVCPGVVSCADILALVARDAVHMLGGPF-----WNVPTGRRDGVVSIQNEAVAKLPPPNGTFSKLKSIFASNGLDVKDLVVLSGGHTIGMSHCNSFSSRLYNFTGKGDMDPSLDKSYAAHLKIKCKPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain