SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41528

Length: 561 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene41528
AACTTTGCTAGGCTTCCAGGGTCAGTGCTATCATATGAAGGAGGAGACATATCGGGGGTGTTAGTCCCATGGCTTTACCTTGGAATGTGTTTCTCATCATTTTGCTGGCATGTGGAGGATCATCACTTCTACTCATTGAATTATATGCATTGGGGTGCTCCCAAGGTGTGGTATGGGGTTCCAGGTTGTGCAGCTGTGCAGTTGGAGCAAGCAATGAGAAAGTATTTGCCACATTTGTTCGAAGAACAGCCAGACTTGTTACATAAGTTGGTCACTCAGTTATCTCCCTCAGTTTTAAATTCAGAAGGTGTACCAGTTTACAGGTGTGTACAAAATGCTGGAGAATTCGTACTTACCTTCCCCGAGCATACCATGCTGGTTTTAACTGTGGTTTCAATTGTGCCGAAGCTGTAAATGTGGCACCAATTGACTGGTTGCCACATGGGCAGAGTGCTGTAGAGCTGTATCGAGAACAGTCTCGCAAGACATCTGTATCACATGATAAGTTACTATTAGGGCGATCAAGAGTGGCTGTGAAATACTCTTTGTGAGATCTTAATA

Ace file of the UniGene sp_v2.0_unigene41528

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S7K7_RICCO	-	-	88%
FL-Next	sp=Probable lysine-specific demethylase JMJ14; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	probable lysine-specific demethylase jmj14-like	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	ARID/BRIGHT DNA-binding domain	IPR001606	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ribosomal protein L32p	IPR002677	-	-
Sma3	JmjC domain	IPR003347	-	-
Sma3	Transcription factor jumonji, JmjN	IPR003349	-	-
Sma3	FY-rich, N-terminal	IPR003888	-	-
Sma3	FY-rich, C-terminal	IPR003889	-	-
Sma3	Zinc finger, C5HC2-type	IPR004198	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Zinc finger, C2H2-type/integrase, DNA-binding	IPR013087	-	-
Sma3		IPR013129	-	-
Sma3	Lysine-specific demethylase-like domain	IPR013637	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	FY-rich, C-terminal subgroup	IPR018516	-	-
Sma3	FY-rich, N-terminal subgroup	IPR018518	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GUI6

Fln msg: Overlapping hits, possible frame ERROR between 366 and 360, Unexpected STOP codon at 3' end. Distance to subject end: 496 aas, your sequence is shorter than subject: 184 - 954

Fln protein: NFARLPGSVLSYEGGDISGVLVPWLYLGMCFSSFCWHVEDHHFYSLNYMHWGAPKVWYGVPGCAAVQLEQAMRKYLPHLFEEQPDLLHKLVTQLSPSVLNSEGVPVYRCVQNAGEFVLTxxxxYHAGFNCGFNCAEAVNVAPIDWLPHGQSAVELYREQSRKTSVSHDKLLLGRSRVAVKYSL*

Protein Length: 185

Fln nts: AACTTTGCTAGGCTTCCAGGGTCAGTGCTATCATATGAAGGAGGAGACATATCGGGGGTGTTAGTCCCATGGCTTTACCTTGGAATGTGTTTCTCATCATTTTGCTGGCATGTGGAGGATCATCACTTCTACTCATTGAATTATATGCATTGGGGTGCTCCCAAGGTGTGGTATGGGGTTCCAGGTTGTGCAGCTGTGCAGTTGGAGCAAGCAATGAGAAAGTATTTGCCACATTTGTTCGAAGAACAGCCAGACTTGTTACATAAGTTGGTCACTCAGTTATCTCCCTCAGTTTTAAATTCAGAAGGTGTACCAGTTTACAGGTGTGTACAAAATGCTGGAGAATTCGTACTTACCxxxxxxxxxxxxTACCATGCTGGTTTTAACTGTGGTTTCAATTGTGCCGAAGCTGTAAATGTGGCACCAATTGACTGGTTGCCACATGGGCAGAGTGCTGTAGAGCTGTATCGAGAACAGTCTCGCAAGACATCTGTATCACATGATAAGTTACTATTAGGGCGATCAAGAGTGGCTGTGAAATACTCTTTGTGAGATCTTAATA

Fln Alignment:

AllPineV4_c38610___NFARLPGSVLSYEGGDISGVLVPWLYLGMCFSSFCWHVEDHHFYSLNYMHWGAPKVWYGVPGCAAVQLEQAMRKYLPHLFEEQPDLLHKLVTQLSPSVLNSEGVPVYRCVQNAGEFVLTFxxAYHAGFNCGFNCAEAVNVAPIDWLPHGQSAVELYREQSRKTSVSHDKLLLGRSRVAVKYSL*DLN
Q8GUI6_______________NLSRLPGSVLAFESCDISGVIVPWLYVGMCFSTFCWHVEDHHLYSMNYLHTGDPKVWYGIPGNHAESFENVMKKRLPDLFEEQPDLLHQLVTQLSPRILKEEGVPVYRAVQRSGEFILTFxxAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEGYSKQRRKSSLSHDKLLLGAAMEAT-YCLWELS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
218			75	25	0.996473
219	66		33		0.997453
220	66		33		0.997453
221	66		33		0.997453
223		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain