SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41383

Length: 305 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene41383
AATGTCTAAATAGCCTTTTAGTGGACTTGAAGATGTGTTGTAATCATCCATATCTTTTCCCAGGACAAGAACCAGTAAGTGATTCTGTGAGAAAGGCATTTGAGATGCTAGTTGGAGCGTCTGGAAAGCTTCAGCTATTGGAAAAGCTGCTTCCACGATTGAAACAAGGTGGACATCGTGTGCTACTTTTCTCACAAATGACAAAGATGCTTGATATACTGGAAGACTTCTTGAACTTCTTAGGATTTGTATATTGTCGAATGGATGGGAGCACATCAGCATCAGAAAGGCAGCATCGAATAAAG

Ace file of the UniGene sp_v2.0_unigene41383 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TJL1_PHYPA	-	-	8.0e-25	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	snf2 family dna-dependent atpase	-	-	5.73387e-29	72%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	HSA	IPR006562	-	-
Sma3	Domain of unknown function DUF1087	IPR009463	-	-
Sma3		IPR012287	-	-
Sma3	HAS subgroup	IPR013999	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3		IPR014778	-	-
Sma3	ATPase, nucleosome remodelling ISWI, HAND domain	IPR015194	-	-
Sma3	SLIDE domain	IPR015195	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD70

Fln msg: Distance to subject end: 192 aas, your sequence is shorter than subject: 101 - 377

Fln protein: CLNSLLVDLKMCCNHPYLFPGQEPVSDSVRKAFEMLVGASGKLQLLEKLLPRLKQGGHRVLLFSQMTKMLDILEDFLNFLGFVYCRMDGSTSASERQHRIK

Protein Length: 102

Fln nts: AATGTCTAAATAGCCTTTTAGTGGACTTGAAGATGTGTTGTAATCATCCATATCTTTTCCCAGGACAAGAACCAGTAAGTGATTCTGTGAGAAAGGCATTTGAGATGCTAGTTGGAGCGTCTGGAAAGCTTCAGCTATTGGAAAAGCTGCTTCCACGATTGAAACAAGGTGGACATCGTGTGCTACTTTTCTCACAAATGACAAAGATGCTTGATATACTGGAAGACTTCTTGAACTTCTTAGGATTTGTATATTGTCGAATGGATGGGAGCACATCAGCATCAGAAAGGCAGCATCGAATAAAG

Fln Alignment:

AllPineV4_c38406___LNSLLVDLKMCCNHPYLFPGQEPVSDSVRKAFEMLVGASGXXXXXXXXXXXXKQGGHRVLLFSQMTKMLDILEDFLNFLGFVYCRMDGSTSASERQHRIK
D5AD70_______________LENLMLQLRKNFNHPDLLQSQFEISYHYPPV-EKLMEQCGKFQLLDRLLKHLRARNHKVLIFSQWTRVLDLLDYCLSESGHDMCRIDGSVKLHDRQRQIK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
262		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain