SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41282

Length: 609 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene41282

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01074, Glyco_hydro_38, Glycosyl hydrolases family 38 N-terminal domain	-	-	8.0e-39	35%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	72%
Blast2go	glycosyl hydrolase family 38 protein	-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	76%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	76%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	76%
Blast2go	apoplast	GO:0048046	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 38, core	IPR000602	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Glycosyl hydrolases 38, C-terminal	IPR011682	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, family 38, central domain	IPR015341	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain