SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene41116

Length: 652 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene41116 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os08g0156900 protein n=4 Tax=Oryza sativa RepID=Q6ZD95_ORYSJ	-	-	69%
FL-Next	sp=Meiotic recombination protein SPO11-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	60%
Blast2go	meiotic recombination protein spo11-2	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	floral organ development	GO:0048437	Biological Process	83%
Blast2go	seed development	GO:0048316	Biological Process	83%
Blast2go	chiasma assembly	GO:0051026	Biological Process	83%
Blast2go	embryo sac development	GO:0009553	Biological Process	83%
Blast2go	meiotic DNA double-strand break formation	GO:0042138	Biological Process	83%
Blast2go	pollen development	GO:0009555	Biological Process	83%
Blast2go	binding	GO:0005488	Molecular Function	83%
Blast2go	catalytic activity	GO:0003824	Molecular Function	83%

Source	InterPros	Term	Type	Identity
Sma3	O-methyltransferase, family 2	IPR001077	-	-
Sma3	Spo11/DNA topoisomerase VI, subunit A	IPR002815	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Plant methyltransferase dimerisation	IPR012967	-	-
Sma3	Meiotic recombination, Spo11	IPR013048	-	-
Sma3	Spo11/DNA topoisomerase VI, subunit A, N-terminal	IPR013049	-	-

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain