SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40863

Length: 445 nt

Origin of reads: Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene40863
ATGGGGAGGAAGAAATTGAGAAGAAACTTGATAAGAATCGTTGGTCTTCAAACTTAGATGCACTTAGCTGGTTTATTGTGGATCGTGCATACATTGGTGGTTTTCCAGAGCCAGGGGGGGCATTAAAAGCATTAGAATTTTTGTTGTCCATGCTGCAGCTTGCCAACAAAGATGGCCGTGTGAAGAAGCAATGCCAACTGGCAAAAGCATTCTCTCGCTAACAAGAGGAAGCAAACCAATAGAAGTATATGTACAAGCTTTATTGAAGAACACAAATCGTATGATAATGTATTGCTTTTCACCTTCATTCTTAAGTTCCATTGGCGAGGATGACATACTTTCACATATGAGCTTACATCTTGAACTTAAAAGAAATGCAGCTGGTGTTCCAACTACAGATTCTTCTGGAGTCAATACATGCACAGTTCTACAGTTATTGATTGCT

Ace file of the UniGene sp_v2.0_unigene40863

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative beige protein [Oryza sativa Japonica Group]	-	-	2.0e-38	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	73%
Blast2go	protein	-	-	4.99016e-41	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	4.99016e-41	70%
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	4.99016e-41	70%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	4.99016e-41	70%
Blast2go	vacuole organization	GO:0007033	Biological Process	4.99016e-41	70%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	BEACH domain	IPR000409	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HBI7

Fln msg: Overlapping hits, possible frame ERROR between 185 and 185, Distance to subject end: 1213 aas, your sequence is shorter than subject: 148 - 3534

Fln protein: GEEEIEKKLDKNRWSSNLDALSWFIVDRAYIGGFPEPGGALKALEFLLSMLQLANKDGRVxxAMPTGKSILSLTRGSKPIEVYVQALLKNTNRMIMYCFSPSFLSSIGEDDILSHMSLHLELKRNAAGVPTTDSSGVNTCTVLQLLIA

Protein Length: 149

Fln nts: ATGGGGAGGAAGAAATTGAGAAGAAACTTGATAAGAATCGTTGGTCTTCAAACTTAGATGCACTTAGCTGGTTTATTGTGGATCGTGCATACATTGGTGGTTTTCCAGAGCCAGGGGGGGCATTAAAAGCATTAGAATTTTTGTTGTCCATGCTGCAGCTTGCCAACAAAGATGGCCGTGTGxxxxxxGCAATGCCAACTGGCAAAAGCATTCTCTCGCTAACAAGAGGAAGCAAACCAATAGAAGTATATGTACAAGCTTTATTGAAGAACACAAATCGTATGATAATGTATTGCTTTTCACCTTCATTCTTAAGTTCCATTGGCGAGGATGACATACTTTCACATATGAGCTTACATCTTGAACTTAAAAGAAATGCAGCTGGTGTTCCAACTACAGATTCTTCTGGAGTCAATACATGCACAGTTCTACAGTTATTGATTGCT

Fln Alignment:

AllPineV4_c37695___EEEIEKKLDKNRWSSNLDALSWFIVDRAYIGGFPEPGGALKALEFLLSMLQLANKDGRVxAMPTGKSILSLTRGSKPIEVYVQALLKNTNRMIMYCFSPSFLSSIGEDDILSHMSLHLELKRNAAGVPTTDSSGVNTCTVLQLLIA
F6HBI7_______________DEEDEKKLDKSRWSSNLDALCTMIVDRVYMGAFPQPATVLKTLEFLLSMLQLANKDGRIxGAAPGKGLLSIARGSRQLDAYIQSIIKNTNRMILYCFLPSFLISIGEDDFLSRLGLQIEPKKKSSPNSSEEDAGIDICTVLQLLVA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
178	25		75		0.996479
184	75		25		0.996475

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain