SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40834

Length: 232 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene40834
CTACTGATGGGAAAGTAGATGATCTGCTCAGAAGAATTAAGGCTGATCCATACATGTACTGTGCGGTTAAAGAATGCTACGCATCAGTTAAACACGTTCTTACCACAATTGTTGAAGGTGACCAAGAGAAACGTGTTATTGATGAGATCTTTGACAAAGTGGAGACAGCGACATTCAAGATGAGCGAGCTTCCCATATTGCACTCAATGATTGTGGATCTAGTGTTTTGTTG

Ace file of the UniGene sp_v2.0_unigene40834

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glucan synthase-like protein [Arabidopsis thaliana]	-	-	6.0e-12	46%
FL-Next	sp=Putative callose synthase 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%
Blast2go	callose synthase	-	-	4.38819e-15	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	4.38819e-15	64%
Blast2go	pollen wall assembly	GO:0010208	Biological Process	4.38819e-15	64%
Blast2go	microsporogenesis	GO:0009556	Biological Process	4.38819e-15	64%
Blast2go	regulation of pollen tube growth	GO:0080092	Biological Process	4.38819e-15	64%
Blast2go	pollen germination	GO:0009846	Biological Process	4.38819e-15	64%
Blast2go	plasma membrane	GO:0005886	Cellular Component	4.38819e-15	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LUD7

Fln msg: Distance to subject end: 976 aas, your sequence is shorter than subject: 76 - 1976

Fln protein: TDGKVDDLLRRIKADPYMYCAVKECYASVKHVLTTIVEGDQEKRVIDEIFDKVETATFKMSELPILHSMIVDLVFC

Protein Length: 77

Fln nts: CTACTGATGGGAAAGTAGATGATCTGCTCAGAAGAATTAAGGCTGATCCATACATGTACTGTGCGGTTAAAGAATGCTACGCATCAGTTAAACACGTTCTTACCACAATTGTTGAAGGTGACCAAGAGAAACGTGTTATTGATGAGATCTTTGACAAAGTGGAGACAGCGACATTCAAGATGAGCGAGCTTCCCATATTGCACTCAATGATTGTGGATCTAGTGTTTTGTTG

Fln Alignment:

AllPineV4_c37657___GKVDDLLRRIKADPYMYCAVKECYASVKHVLTTIVEGDQEKRVIDEIFDKVETA--------TFKMSELPILHSMIVDLV
Q9LUD7_______________GKDEVLYRRIRKDEYMYYAVKECYESLKYILQILVVGDLEKKIISGIINEIEESIRQSSLLEEFKMAELPALHDKCIELV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
215	25		75		0.996473
216		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain