SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40572

Length: 508 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene40572
ATGGGGGGCACTGAGTTGGGATTTGAAAGGGAAGAAATGGTGATGGCCAACCAGTTGATAGCTAACAATTTATTGCTCAGAACTTTTGAAGCTACTGCGATTCATACAGAAGCTTCGGTGTATGGACATTTGAGGTGCAGCCAGGGGCCTCAATTTCGTTTTCCAAGAAGTCGTACGAGTATTTGTAGACCTTTTATGCCGGGATTGAGCTATAAAAAAAGCTGGGAGTTTATCCCAAGTGCTTCAGTGGAAAAGGAAGACTCTCCCGTAGACCGCACCACCGAGGACCTGGACTCAAAATGTGGAGCAGGTGATCCTTTATTTTTAGTGGATGAAAACAGTTCACAAGACTTTGAAGCTAATTACAAGAAGAGGACTGATTTATTGAAGGCTCTTACTATTTTTGCCTCTGTAGCTGCTGGAGCAGTGGCCATCAATCATTCTTGGGTAGCTGCCAATCAGGATTTGGCAATGGTATTGGTATTTGCATTGGGATATGCTGGCTATT

Ace file of the UniGene sp_v2.0_unigene40572 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative Na+/H+ antiporter precursor [Oryza sativa Japonica Group] dbj\|BAG93744.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	6.0e-21	51%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	58%
Blast2go	na+ h+ antiporter	-	-	1.06958e-25	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	1.06958e-25	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Divalent ion symporter	IPR004680	-	0.0	-
Sma3	Na+/H+ antiporter	IPR018390	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9GHD6

Fln msg: Distance to subject end: 422 aas, your sequence is shorter than subject: 169 - 586

Fln protein: MGGTELGFEREEMVMANQLIANNLLLRTFEATAIHTEASVYGHLRCSQGPQFRFPRSRTSICRPFMPGLSYKKSWEFIPSASVEKEDSPVDRTTEDLDSKCGAGDPLFLVDENSSQDFEANYKKRTDLLKALTIFASVAAGAVAINHSWVAANQDLAMVLVFALGYAGY

Protein Length: 170

Fln nts: _-_ATGGGGGGCACTGAGTTGGGATTTGAAAGGGAAGAAATGGTGATGGCCAACCAGTTGATAGCTAACAATTTATTGCTCAGAACTTTTGAAGCTACTGCGATTCATACAGAAGCTTCGGTGTATGGACATTTGAGGTGCAGCCAGGGGCCTCAATTTCGTTTTCCAAGAAGTCGTACGAGTATTTGTAGACCTTTTATGCCGGGATTGAGCTATAAAAAAAGCTGGGAGTTTATCCCAAGTGCTTCAGTGGAAAAGGAAGACTCTCCCGTAGACCGCACCACCGAGGACCTGGACTCAAAATGTGGAGCAGGTGATCCTTTATTTTTAGTGGATGAAAACAGTTCACAAGACTTTGAAGCTAATTACAAGAAGAGGACTGATTTATTGAAGGCTCTTACTATTTTTGCCTCTGTAGCTGCTGGAGCAGTGGCCATCAATCATTCTTGGGTAGCTGCCAATCAGGATTTGGCAATGGTATTGGTATTTGCATTGGGATATGCTGGCTATT

Fln Alignment:

AllPineV4_c37293___PSASVEKEDSP--VDRTTEDLDSKCGAGDPLFLVDENSSQDFEANYKKRTDLLKALTIFASVAAGAVAINHSWVAANQDLAMVLVFALGYAG
B9GHD6_______________PSSSNKRQGQQPIIDNQLQDLEPTSGSCDPLCSLDETSSQDLEANYQPRTDLVKALAVFAAAATGAVAINHSWVAANQDLAMALLFGIGYAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain