SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40566

Length: 222 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene40566
CGTCGTGACCTTGGCTGTCACTCGGTGGAGAATCTTAGCTGATGTCTTGTACGACTTAGGGACTGGTCTGGAAGTACTTTCTCCTGTTTGTCCACAGTTTTTCCTTCAGATGGCTGGCTTGGGTAACTTTGCTAAGGGGATGGCCGTGGTTGCGGCCAGGGCAACACGATTGCCAATATATTCTTCTTTTGCAAAAGAAGGCAATCTGAGTGATCTTTATGC

Ace file of the UniGene sp_v2.0_unigene40566 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF647 domain containing protein	-	-	2.0e-24	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	upf0420 protein c16orf58 homolog	-	-	1.44665e-34	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	1.44665e-34	94%
Blast2go	auxin polar transport	GO:0009926	Biological Process	1.44665e-34	94%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	1.44665e-34	94%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.44665e-34	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF647	IPR006968	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKD3

Fln msg: Distance to subject end: 235 aas, your sequence is shorter than subject: 73 - 446

Fln protein: VVTLAVTRWRILADVLYDLGTGLEVLSPVCPQFFLQMAGLGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLY

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCGGTGGAGAATCTTAGCTGATGTCTTGTACGACTTAGGGACTGGTCTGGAAGTACTTTCTCCTGTTTGTCCACAGTTTTTCCTTCAGATGGCTGGCTTGGGTAACTTTGCTAAGGGGATGGCCGTGGTTGCGGCCAGGGCAACACGATTGCCAATATATTCTTCTTTTGCAAAAGAAGGCAATCTGAGTGATCTTTATGC

Fln Alignment:

AllPineV4_c37285___WRILADVLYDLGTGLEVLSPVCPQFFLQMAGLGNFAKGMAVVAARATRLPIYSSFAKEGNLSDL
B8LKD3_______________WRLIADLMNDLGMLMDLVSPLYPASFVIILCLGSIARSFTGVASGATRAALTQHFALQHNAADI

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
121	33		66		0.997452
146	66			33	0.997464
150		66	33		0.997452
152			33	66	0.997452
153	33	66			0.997452
157	66	33			0.997454
159	33	66			0.997453
165	33	66			0.997452
167			33	66	0.997452
169	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain