SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40547

Length: 410 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene40547
TTCGGGTTGAAGACCTAAAGGTAGAGGACATGTTGAAAAAGGAGTTTTGCTGAATTTCATGCACAGCAGGCATTGCCTGAACAACAGAAGCAGCTTCTGAAAGGAGAGGGAGAACTTTCCAAAATGAATGTAGCAATTGATTGTATCCGGGGTGAGCCTACAATTGAAGAATATTATGAAATGGCAGTAGAAGTAGAGAAGCTTGGTGACCACATCCAAGAGACGATCATGCAATCGCGTGCAACCCAGCAAGCACTAACGACAGGAAGGGTAGTTGTTGTCCGTACAGATTTGGTTCCTTTAATTTCATTGGGAGTAGTTTTGAAACCACCTTCCAGTACCAACAAAAATGCCATTGTATTGGTATTGAATCAAGACCCATCTTCCTCCATGCCTGACAAATTGATTTC

Ace file of the UniGene sp_v2.0_unigene40547 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U0S9_PHYPA	-	-	2.0e-31	58%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	63%
Blast2go	helicase ski2w-like	-	-	2.84963e-37	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	2.84963e-37	66%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	DSH, C-terminal	IPR012961	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, ATP-dependent, SK12/DOB1	IPR016438	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8QRF8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 375 aas, your sequence is shorter than subject: 136 - 1310

Fln protein: FGLKT*R*RTC*KRSFAEFHAQQALPEQQKQLLKGEGELSKMNVAIDCIRGEPTIEEYYEMAVEVEKLGDHIQETIMQSRATQQALTTGRVVVVRTDLVPLISLGVVLKPPSSTNKNAIVLVLNQDPSSSMPDKLI

Protein Length: 137

Fln nts: TTCGGGTTGAAGACCTAAAGGTAGAGGACATGTTGAAAAAGGAGTTTTGCTGAATTTCATGCACAGCAGGCATTGCCTGAACAACAGAAGCAGCTTCTGAAAGGAGAGGGAGAACTTTCCAAAATGAATGTAGCAATTGATTGTATCCGGGGTGAGCCTACAATTGAAGAATATTATGAAATGGCAGTAGAAGTAGAGAAGCTTGGTGACCACATCCAAGAGACGATCATGCAATCGCGTGCAACCCAGCAAGCACTAACGACAGGAAGGGTAGTTGTTGTCCGTACAGATTTGGTTCCTTTAATTTCATTGGGAGTAGTTTTGAAACCACCTTCCAGTACCAACAAAAATGCCATTGTATTGGTATTGAATCAAGACCCATCTTCCTCCATGCCTGACAAATTGATTTC

Fln Alignment:

AllPineV4_c37264___KRSFAEFHAQQALPEQQKQLLKGEGELSKMNVAIDCIRGEPTIEEYYEMAVEVEKLGDHIQETIMQSRATQQALTTGRVVVVRTDLVPLISLGVVLKPPSSTNKNAIVLVL
D8QRF8_______________KRSFAEFHAQRALPEQQQQLLRQEGELSKMAATIECILGDPTIEDYYKLASEADMLGESIQEKVMNSRAAQQALIPGRIVTVKTTIYPVPALGVVLRGPSGTTKMSIVLTL

SNPs (tot: 3)

Position	A %	C %	T %	Probability
235	25		75	0.996473
238	25	75		0.996473
241	75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain