SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40245

Length: 311 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene40245
GGTGCTATCCGCATGTAGCCATGCAGGCTTGGTGAATGAAGGCTGGCAACACTTCAATCTCATGAGTCAAGAGTATCAGATCACACCGAGAGTGGAGCACTATGCCTGTATGGTTGATCTCCTTGGTCGTGCTGGACGACTGGATGAAGCTTGGGACTTCATCAGCAAGATGCCATTAGAACCTAGCGCATCTGTGTGGGGGGCTTTGCTTGCTGCCTGCAAAATTCATTGCAATATAGAGCTAGGGGAGCAAGTAGCAAGACACCTACTTGAGCTAGAGCCTGAAAATGCCGGAAATTATGTGCTTCTAG

Ace file of the UniGene sp_v2.0_unigene40245 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	protein	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 163 aas, your sequence is shorter than subject: 103 - 312

Fln protein: VLSACSHAGLVNEGWQHFNLMSQEYQITPRVEHYACMVDLLGRAGRLDEAWDFISKMPLEPSASVWGALLAACKIHCNIELGEQVARHLLELEPENAGNYVLL

Protein Length: 104

Fln nts: GGTGCTATCCGCATGTAGCCATGCAGGCTTGGTGAATGAAGGCTGGCAACACTTCAATCTCATGAGTCAAGAGTATCAGATCACACCGAGAGTGGAGCACTATGCCTGTATGGTTGATCTCCTTGGTCGTGCTGGACGACTGGATGAAGCTTGGGACTTCATCAGCAAGATGCCATTAGAACCTAGCGCATCTGTGTGGGGGGCTTTGCTTGCTGCCTGCAAAATTCATTGCAATATAGAGCTAGGGGAGCAAGTAGCAAGACACCTACTTGAGCTAGAGCCTGAAAATGCCGGAAATTATGTGCTTCTAG

Fln Alignment:

AllPineV4_c36844___VLSACSHAGLVNEGWQHFNLMSQEYQITPRVEHYACMVDLLGRAGRLDEAWDFISKMPLEPSASVWGALLAACKIHCNIELGEQVARHLLELEPENAGNYVLL
D5ADG9_______________VLSACSHAGLVDEGWKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCRIHCNIELGERVAELLLNLDPDNAGYYVLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain