SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene40043

Length: 571 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene40043
CTGACTGGATCATGCACGAATACAGGCTTGAGACGAACGAGAACGCTCCTCCTCAGGAAGAAGGATGGGTGGTTTGCCGTGCCTTCAAGAAACGATCAACTGCCCAGAAGAAAGCAAATGATAGGGACTTCTCTGCAACTTCAGCTTGCTATGAAGCTGATCAGAATAGTTCATTACCTGAATTAGATTCTCTGGATATCAAACTTCCTCATCAACTAGATCACCACCAGTTTGGATACCAATTGCAGCAATTCTCAAGCTGCAAACAGGAGATGGAGCCACTCGACTACCAACTCGAGCACAACCCATTTCTGCAACTTCCTCAACTGGAGAGCCCAAAACTTCCTTGCAATGCTAACTCCTCCTCCAGTTCTGCTGGGAATAGGCGCGAATACTCCATGACAAGTTTACTGGAATCTGCAAACATGGAGATGCTTTTACCACACTCAACATGCACAGGGCCTCATGATCAACAACAACTAGGTGCATTTTATGGTGATGAGCAGGTTTACACAGACTGGAGAATGTTAGATAAATTCGTGGCATCACAGCTCAGCCAGGAAGATACATT

Ace file of the UniGene sp_v2.0_unigene40043 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NAC domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T2V2_RICCO	-	-	2.0e-31	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	nac domain ipr003441	-	-	3.46646e-38	54%

Source	InterPros	Term	Type	e value	Identity
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	0.0	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLZ9

Fln msg: Distance to subject end: 60 aas, your sequence is shorter than subject: 189 - 392

Fln protein: DWIMHEYRLETNENAPPQEEGWVVCRAFKKRSTAQKKANDRDFSATSACYEADQNSSLPELDSLDIKLPHQLDHHQFGYQLQQFSSCKQEMEPLDYQLEHNPFLQLPQLESPKLPCNANSSSSSAGNRREYSMTSLLESANMEMLLPHSTCTGPHDQQQLGAFYGDEQVYTDWRMLDKFVASQLSQEDT

Protein Length: 190

Fln nts: CTGACTGGATCATGCACGAATACAGGCTTGAGACGAACGAGAACGCTCCTCCTCAGGAAGAAGGATGGGTGGTTTGCCGTGCCTTCAAGAAACGATCAACTGCCCAGAAGAAAGCAAATGATAGGGACTTCTCTGCAACTTCAGCTTGCTATGAAGCTGATCAGAATAGTTCATTACCTGAATTAGATTCTCTGGATATCAAACTTCCTCATCAACTAGATCACCACCAGTTTGGATACCAATTGCAGCAATTCTCAAGCTGCAAACAGGAGATGGAGCCACTCGACTACCAACTCGAGCACAACCCATTTCTGCAACTTCCTCAACTGGAGAGCCCAAAACTTCCTTGCAATGCTAACTCCTCCTCCAGTTCTGCTGGGAATAGGCGCGAATACTCCATGACAAGTTTACTGGAATCTGCAAACATGGAGATGCTTTTACCACACTCAACATGCACAGGGCCTCATGATCAACAACAACTAGGTGCATTTTATGGTGATGAGCAGGTTTACACAGACTGGAGAATGTTAGATAAATTCGTGGCATCACAGCTCAGCCAGGAAGATACATT

Fln Alignment:

AllPineV4_c36549___DWIMHEYRLETNENAPP------QEEGWVVCRAFKKRSTAQKKANDRDFSATSACYEADQNSSLPELDSLDIKLPHQLDHHQFGYQLQQFSSCKQEMEPLDYQLEHNPFLQLPQLESPKLPCXXXXXXXXA-----GNRREYSMTSLLESA--------NMEMLLPHSTCTGPHDQQQLGAFYGDEQVYTDWRMLDKFVASQLSQED
B8LLZ9_______________DWIMHEYRLDDAEYPQANTFNELQEDGWVVCRVFKKRNHHKSQES----AELSPKYGSKQFSNNKILSDSDCPSDNLTDPLHYTHQLNM---CKQELEMQQYAFPHDQFMQLPQLESPKIPTCNNPPSSGIKRFFPDSRSGFFQLENITSSKRPCSYPMNLDMTELEGSTVTTHDHMTDFKPAEEVQNLQDWTVLDRLVASHLNGQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain