SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39981

Length: 271 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene39981
AATGTAAAATCAAAGGTGTTTCGCTGACTGAATTGTTCACACCAGAGCAAATTAGGGAGCATATAACAGGGCTGCGTCAATGGGTTGGTCAGAGCAAAGCAAAGGTTGAAAAGAACCAGGCTATGGAAAATCAAATGAGTGAGAACTCATGTCAATTGTGTGCAGTGGAGAAACTTACATTTGAGCCACCTCCTATTTATTGCACACCATGTGGGGCTCGCATTAAAAAAATGCCATGTATTATACCATGGGCAGTGGTGACACACGTCAC

Ace file of the UniGene sp_v2.0_unigene39981 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription cofactor, putative n=1 Tax=Ricinus communis RepID=B9RHR9_RICCO	-	-	2.0e-39	93%
FL-Next	sp=Histone acetyltransferase HAC12; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	93%
Blast2go	histone acetyltransferase	-	-	1.80964e-41	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	1.80964e-41	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	1.80964e-41	95%
Blast2go	photoperiodism, flowering	GO:0048573	Biological Process	1.80964e-41	95%
Blast2go	flower development	GO:0009908	Biological Process	1.80964e-41	95%
Blast2go	histone acetylation	GO:0016573	Biological Process	1.80964e-41	95%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	1.80964e-41	95%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, TAZ-type	IPR000197	-	-
Sma3	Zinc finger, ZZ-type	IPR000433	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3		IPR009255	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FWQ5

Fln msg: Distance to subject end: 708 aas, your sequence is shorter than subject: 89 - 1706

Fln protein: CKIKGVSLTELFTPEQIREHITGLRQWVGQSKAKVEKNQAMENQMSENSCQLCAVEKLTFEPPPIYCTPCGARIKKMPCIIPWAVVTHV

Protein Length: 90

Fln nts: AATGTAAAATCAAAGGTGTTTCGCTGACTGAATTGTTCACACCAGAGCAAATTAGGGAGCATATAACAGGGCTGCGTCAATGGGTTGGTCAGAGCAAAGCAAAGGTTGAAAAGAACCAGGCTATGGAAAATCAAATGAGTGAGAACTCATGTCAATTGTGTGCAGTGGAGAAACTTACATTTGAGCCACCTCCTATTTATTGCACACCATGTGGGGCTCGCATTAAAAAAATGCCATGTATTATACCATGGGCAGTGGTGACACACGTCAC

Fln Alignment:

AllPineV4_c36466___KIKGVSLTELFTPEQIREHITGLRQWVGQSKAKVEKNQAMENQMSENSCQLCAVEKLTFEPPPIYCTPCGARIKK
Q9FWQ5_______________KIKGVSLTELFTPEQVREHIRGLRQWVGQSKAKAEKNQAMENSMSENSCQLCAVEKLTFEPPPIYCTPCGARIKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain